PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn198751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 767aa MW: 85868 Da PI: 4.8938

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn198751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.3	1.7e-21	563	634	29	100
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 f n+hklFG sn++kl+++l++ e+++am+++++++++ra+dPv G++++i++lqqq+e kael l+ ++ Achn198751 563 GFLNAHKLFGISNITKLIRNLDPPEKDQAMRTIIFQSDVRANDPVGGCYRIISELQQQIEYYKAELGLVLQQ 634 599**************************************************************9887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.20.20.80	1.9E-44	2	223	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01301	7.0E-42	2	224	IPR031330	Glycoside hydrolase 35, catalytic domain
SuperFamily	SSF51445	6.74E-32	2	220	IPR017853	Glycoside hydrolase superfamily
PRINTS	PR00742	5.7E-15	19	34	IPR001944	Glycoside hydrolase, family 35
PROSITE pattern	PS01182	0	21	33	IPR019801	Glycoside hydrolase, family 35, conserved site
PRINTS	PR00742	5.7E-15	200	216	IPR001944	Glycoside hydrolase, family 35
SuperFamily	SSF49785	5.53E-20	343	384	IPR008979	Galactose-binding domain-like
Gene3D	G3DSA:2.60.120.260	3.1E-20	346	466	IPR008979	Galactose-binding domain-like
SuperFamily	SSF49785	5.53E-20	418	478	IPR008979	Galactose-binding domain-like
PRINTS	PR00742	5.7E-15	450	466	IPR001944	Glycoside hydrolase, family 35
PROSITE profile	PS50891	12.979	532	635	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-18	563	629	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MVERWWGVLL PLIAPLLYSN GGPIIMVQIE NEFGSYGDDK VYLHHLVTLA RGHLGDDIIL 60 YTTDGGSRET LEKGTIHGDA VFSVWLSFHN EDINYVKLYH DPSAITQATS GTIIGTTTTF 120 TTTEAIVLIN SAFWSLLEFY TGWLTHWGEN IAKTDAHFTA AALEMILSRN GSAVLYMAHG 180 GTNFGFYCGA NTGANKSDYK PDLTSYDYDA PIKESGDVDN AKFIVPSNNE KTGYGHIQLQ 240 KTAFLFDTLN IEDATDVSKS ISPISMESAG QMFGFLLYVS RYAATYNERT LFIEEVHDRA 300 QVFISCPSDS KRPTYIGTIE RWSNRPLGLP YTDCPSKIRL FILVENMGRV NYGKFMFDRK 360 GILSSVYLDG ELLHSWKMFS VPFQNLNDKQ KGNPIIQSAY LDIIKSSADK KLEDISDNSS 420 EEPAFFAGYF TVDKASQLKD TFISFRGWGK GIAFVNEFNI GRFWPVILEL DSPNPELVVT 480 SVDQPDFTCG SSSSKVTELT NQFEKCQQLL NSISGSINAK AMTVEGQKRK LEESEQLLNQ 540 RKNVPVRGSG TGTLQALNHD MIGFLNAHKL FGISNITKLI RNLDPPEKDQ AMRTIIFQSD 600 VRANDPVGGC YRIISELQQQ IEYYKAELGL VLQQLAICCA SHQSRTSLTY GLEDLSTLNC 660 ESIVNPMSND RIQETHEEEY FLHDNNNVVP LQDIVAWAMQ DTVSASLHDK KTFVNECDDV 720 KPTVLEIGGE RLELKFDHEE EKIQHSDEAI SKDKGILRLP PSFLKM*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MVERWWGVLL PLIAPLLYSN GGPIIMVQIE NEFGSYGDDK VYLHHLVTLA RGHLGDDIIL  60
YTTDGGSRET LEKGTIHGDA VFSVWLSFHN EDINYVKLYH DPSAITQATS GTIIGTTTTF  120
TTTEAIVLIN SAFWSLLEFY TGWLTHWGEN IAKTDAHFTA AALEMILSRN GSAVLYMAHG  180
GTNFGFYCGA NTGANKSDYK PDLTSYDYDA PIKESGDVDN AKFIVPSNNE KTGYGHIQLQ  240
KTAFLFDTLN IEDATDVSKS ISPISMESAG QMFGFLLYVS RYAATYNERT LFIEEVHDRA  300
QVFISCPSDS KRPTYIGTIE RWSNRPLGLP YTDCPSKIRL FILVENMGRV NYGKFMFDRK  360
GILSSVYLDG ELLHSWKMFS VPFQNLNDKQ KGNPIIQSAY LDIIKSSADK KLEDISDNSS  420
EEPAFFAGYF TVDKASQLKD TFISFRGWGK GIAFVNEFNI GRFWPVILEL DSPNPELVVT  480
SVDQPDFTCG SSSSKVTELT NQFEKCQQLL NSISGSINAK AMTVEGQKRK LEESEQLLNQ  540
RKNVPVRGSG TGTLQALNHD MIGFLNAHKL FGISNITKLI RNLDPPEKDQ AMRTIIFQSD  600
VRANDPVGGC YRIISELQQQ IEYYKAELGL VLQQLAICCA SHQSRTSLTY GLEDLSTLNC  660
ESIVNPMSND RIQETHEEEY FLHDNNNVVP LQDIVAWAMQ DTVSASLHDK KTFVNECDDV  720
KPTVLEIGGE RLELKFDHEE EKIQHSDEAI SKDKGILRLP PSFLKM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4mad_A	7e-73	2	466	141	553	Beta-galactosidase
4mad_B	7e-73	2	466	141	553	Beta-galactosidase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028123915.1	0.0	beta-galactosidase 17 isoform X2
Swissprot	Q93Z24	0.0	BGA17_ARATH; Beta-galactosidase 17
TrEMBL	A0A2R6PSZ5	0.0	A0A2R6PSZ5_ACTCH; Beta-galactosidase
STRING	evm.model.supercontig_25.44	0.0	(Carica papaya)
STRING	XP_006426555.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6522	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-37	LOB domain-containing protein 22

Publications ? help Back to Top
Iglesias N, et al. Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana. Plant Cell Physiol., 2006. 47(1): p. 55-63 [PMID:16267099] Ahn YO, et al. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35. Phytochemistry, 2007. 68(11): p. 1510-20 [PMID:17466346] Chandrasekar B,van der Hoorn RA Beta galactosidases in Arabidopsis and tomato - a mini review. Biochem. Soc. Trans., 2016. 44(1): p. 150-8 [PMID:26862200]