PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn197821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 23500.4 Da PI: 4.569 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 29.3 | 2.4e-09 | 1 | 41 | 58 | 98 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 m+s++ye+++ r PvyG++gvi +l +l+q+ +el++ + Achn197821 1 MKSVIYESDMHERFPVYGCCGVICHLYCKLAQVVEELKYEH 41 89*********************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.1E-6 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKSVIYESDM HERFPVYGCC GVICHLYCKL AQVVEELKYE HVRLAMCGEE WHNLQIVDHH 60 DAPDPTLQFD MNWSGDALMM LHQHPAVHEM PFEHLIMTVN NEDIAKSYWG QQTNYISNNN 120 SVPIQTQFVP SQSFPVQQET KVLDYDDITF DTMADDRQSY IESKEVCELS CKSSLYNNMQ 180 PIDQFASKIN GKSAAACFNL TSFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092612.1 | 2e-59 | LOB domain-containing protein 27-like | ||||
TrEMBL | A0A2R6P9G8 | 2e-90 | A0A2R6P9G8_ACTCH; LOB domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |