PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn187631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 268aa    MW: 30039.5 Da    PI: 5.9852
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn187631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix113.21.5e-35109193186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k ev aLi++r+++++++++g  k+plWee+s++mr  g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  Achn187631 109 RWPKTEVEALIKIRTDLDSKYQEGGPKGPLWEEISAAMRNVGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLN 193
                 8*********************************************************************8.99**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0012106168IPR001005SANT/Myb domain
CDDcd122033.02E-30108173No hitNo description
PROSITE profilePS500907.41108166IPR017877Myb-like domain
PfamPF138371.6E-24108195No hitNo description
Gene3DG3DSA:1.10.10.601.1E-4108165IPR009057Homeodomain-like
SuperFamilySSF466893.41E-5108182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MARMNREHDL LAHERSITAA KDAAVIAFLQ KVSDQQIPNA PQIQIQMQEP SIRHIPPPPP  60
PPPSQSQPQP QPQPQPPQLA IQPAVKTLET PKNDNGGNNT NFLPTSSSRW PKTEVEALIK  120
IRTDLDSKYQ EGGPKGPLWE EISAAMRNVG YNRNPKRCKE KWENINKYFK KVKESNKKRP  180
EDSKTCPYFH QLNALYREKT SRIGNDGASS ALDPMVPIMV QPEQQWPLLQ ENDHNNDHDS  240
GEDEEEEDEA GGYQIVTNKA SSVGTGE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071392e-43AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBankAL6065872e-43AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBankAP0149602e-43AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-43CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551972e-43CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBankX682612e-43X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117969.12e-92trihelix transcription factor GT-2-like
SwissprotQ391171e-64TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2R6RNZ51e-168A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like
STRINGXP_009594163.11e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-76Trihelix family protein