PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn187631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 268aa MW: 30039.5 Da PI: 5.9852 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 113.2 | 1.5e-35 | 109 | 193 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++++++++g k+plWee+s++mr g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ Achn187631 109 RWPKTEVEALIKIRTDLDSKYQEGGPKGPLWEEISAAMRNVGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLN 193 8*********************************************************************8.99**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0012 | 106 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.02E-30 | 108 | 173 | No hit | No description |
PROSITE profile | PS50090 | 7.41 | 108 | 166 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.6E-24 | 108 | 195 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 108 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.41E-5 | 108 | 182 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MARMNREHDL LAHERSITAA KDAAVIAFLQ KVSDQQIPNA PQIQIQMQEP SIRHIPPPPP 60 PPPSQSQPQP QPQPQPPQLA IQPAVKTLET PKNDNGGNNT NFLPTSSSRW PKTEVEALIK 120 IRTDLDSKYQ EGGPKGPLWE EISAAMRNVG YNRNPKRCKE KWENINKYFK KVKESNKKRP 180 EDSKTCPYFH QLNALYREKT SRIGNDGASS ALDPMVPIMV QPEQQWPLLQ ENDHNNDHDS 240 GEDEEEEDEA GGYQIVTNKA SSVGTGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107139 | 2e-43 | AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence. | |||
GenBank | AL606587 | 2e-43 | AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence. | |||
GenBank | AP014960 | 2e-43 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 2e-43 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855197 | 2e-43 | CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence. | |||
GenBank | X68261 | 2e-43 | X68261.1 O.sativa gt-2 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117969.1 | 2e-92 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-64 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2R6RNZ5 | 1e-168 | A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like | ||||
STRING | XP_009594163.1 | 1e-87 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-76 | Trihelix family protein |