PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn187621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 282aa MW: 31517.6 Da PI: 8.9665 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.8 | 9.6e-31 | 51 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++keg++ + + +t+++fdql+ Achn187621 51 RWPRQETLALLKVRSDMDAAFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKEGRSTK--SDGKTYRFFDQLQ 134 8********************************************************************86..55667******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.3E-4 | 48 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.841 | 50 | 108 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.21E-24 | 50 | 115 | No hit | No description |
Pfam | PF13837 | 3.3E-20 | 50 | 136 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MIGVLGSSGD GAAEEEGVVG SEEGAVGTSM SEEEKVRIEE GERSLGGGGN RWPRQETLAL 60 LKVRSDMDAA FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC KEKFENVYKY HKRTKEGRST 120 KSDGKTYRFF DQLQALENQP NSLQFLPPVP RSQPQAMTIE GANPPPPQLP PPLPPPIVSQ 180 VSIPPIPNPI NPLLSNPPPP PPNPTLSTGI ASSYHFKMPE NSTSISTSSS STSSEEDPER 240 RRKRKRKWEA FFQRLMMEVI QKQEEMQKKF LETLERREHD R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 245 | RRKRKR |
2 | 240 | 246 | RRKRKRK |
3 | 241 | 246 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028054459.1 | 1e-91 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-59 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2R6RNZ5 | 1e-124 | A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like | ||||
STRING | EOY16712 | 1e-77 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-50 | Trihelix family protein |