PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn187621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 282aa    MW: 31517.6 Da    PI: 8.9665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn187621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.89.6e-3151134186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++keg++ +   + +t+++fdql+
  Achn187621  51 RWPRQETLALLKVRSDMDAAFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKEGRSTK--SDGKTYRFFDQLQ 134
                 8********************************************************************86..55667******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-448110IPR001005SANT/Myb domain
PROSITE profilePS500906.84150108IPR017877Myb-like domain
CDDcd122031.21E-2450115No hitNo description
PfamPF138373.3E-2050136No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MIGVLGSSGD GAAEEEGVVG SEEGAVGTSM SEEEKVRIEE GERSLGGGGN RWPRQETLAL  60
LKVRSDMDAA FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC KEKFENVYKY HKRTKEGRST  120
KSDGKTYRFF DQLQALENQP NSLQFLPPVP RSQPQAMTIE GANPPPPQLP PPLPPPIVSQ  180
VSIPPIPNPI NPLLSNPPPP PPNPTLSTGI ASSYHFKMPE NSTSISTSSS STSSEEDPER  240
RRKRKRKWEA FFQRLMMEVI QKQEEMQKKF LETLERREHD R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RRKRKR
2240246RRKRKRK
3241246RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054459.11e-91trihelix transcription factor GT-2-like
SwissprotQ391171e-59TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2R6RNZ51e-124A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like
STRINGEOY167121e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-50Trihelix family protein