PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn187621

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 282aa MW: 31517.6 Da PI: 8.9665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn187621	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.8	9.6e-31	51	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++keg++ + + +t+++fdql+ Achn187621 51 RWPRQETLALLKVRSDMDAAFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKEGRSTK--SDGKTYRFFDQLQ 134 8******************************************************************86..55667****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.3E-4	48	110	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.841	50	108	IPR017877	Myb-like domain
CDD	cd12203	1.21E-24	50	115	No hit	No description
Pfam	PF13837	3.3E-20	50	136	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MIGVLGSSGD GAAEEEGVVG SEEGAVGTSM SEEEKVRIEE GERSLGGGGN RWPRQETLAL 60 LKVRSDMDAA FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC KEKFENVYKY HKRTKEGRST 120 KSDGKTYRFF DQLQALENQP NSLQFLPPVP RSQPQAMTIE GANPPPPQLP PPLPPPIVSQ 180 VSIPPIPNPI NPLLSNPPPP PPNPTLSTGI ASSYHFKMPE NSTSISTSSS STSSEEDPER 240 RRKRKRKWEA FFQRLMMEVI QKQEEMQKKF LETLERREHD R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	RRKRKR
2	240	246	RRKRKRK
3	241	246	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028054459.1	1e-91	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-59	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2R6RNZ5	1e-124	A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like
STRING	EOY16712	1e-77	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-50	Trihelix family protein