PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn185011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ARR-B | ||||||||
Protein Properties | Length: 574aa MW: 63403.7 Da PI: 6.6408 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.9 | 1.3e-24 | 195 | 248 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k rl+W++eLH++Fv+a+eqLGG A+Pk+ile+m+v+gL++e+v+S LQk++ Achn185011 195 KHRLVWSKELHNKFVDALEQLGGGSTAVPKKILEVMDVPGLSRENVASNLQKFK 248 68**************************************************97 PP | |||||||
2 | Response_reg | 70.4 | 7.4e-24 | 30 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + ++l+ ++l k +y +v+++++++eal++l++++ +Dl+++D+em +md ++ll+ i e ++p+i+++a+++ e + + ++ Ga Achn185011 30 VLAVDDNLVCLKLIVTLLVKCRY-KVTATTKPTEALDMLRKNKesYDLVITDVEMLDMDSFQLLQIIGIEM-DVPVIMISANDDTESVMKGVRHGAL 124 799********************.***************888889********************996544.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 ++l+Kp+ +eel + Achn185011 125 EYLVKPVRIEELKN 138 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 9.11E-32 | 26 | 151 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.4E-37 | 27 | 165 | No hit | No description |
SMART | SM00448 | 1.1E-25 | 28 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.217 | 29 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.5E-19 | 30 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.47E-25 | 31 | 143 | No hit | No description |
PROSITE profile | PS51294 | 9.555 | 192 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 193 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-14 | 193 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-20 | 195 | 248 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MMSENDQDLA NPNPNLESNA KTEFPEGLRV LAVDDNLVCL KLIVTLLVKC RYKVTATTKP 60 TEALDMLRKN KESYDLVITD VEMLDMDSFQ LLQIIGIEMD VPVIMISAND DTESVMKGVR 120 HGALEYLVKP VRIEELKNIW QHVVRKKLFE QAKSGTRKAT TDQNPMPSKR QRDKGKEKEE 180 ETKGPSDGES SATRKHRLVW SKELHNKFVD ALEQLGGGST AVPKKILEVM DVPGLSRENV 240 ASNLQKFKNL LKKDSQKSEM NLESENNIDS SNPNRHISDI TTLPYNNLGL NNIGNPGMAA 300 SFGNRNQTFS AYLANRRPLY QKCLLVPQVA DQVCPNVQNP VFGSLLPSPI PTWNPFPRPE 360 LNGMRLHSHV PRSFTAGQTS PSTMPLGLVP YSRPPDPLNL VQMLGDGSTQ LSRISQPDPL 420 AMMVPSSSQG QNERRNLVNF NGRGETSGFT FEMRGQIKVE STQNGQFVQN QPSENTQTET 480 NGNYNNCSSP DDDLSAMIRQ FSNNGPPSFT AGQTSPSTMP LGLVPYSRPP DPLNLVQMLG 540 DGSTQLSRIS QPDPLAMVVP SSSQGTSFSY SFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-15 | 191 | 255 | 1 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028088032.1 | 1e-134 | two-component response regulator ARR18-like | ||||
TrEMBL | A0A2R6R510 | 0.0 | A0A2R6R510_ACTCH; Two-component response regulator like | ||||
STRING | XP_010259817.1 | 8e-94 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15489 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 6e-73 | response regulator 12 |