PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 546aa    MW: 60518.4 Da    PI: 8.2228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34253309259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  Achn182751 253 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQITEIIYKGQHNHQ 309
                 8****************************************.***************8 PP
2WRKY105.52.8e-33432490159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Achn182751 432 LDDGYRWRKYGQKIVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVVTTYEGKHNHD 490
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30244311IPR003657WRKY domain
SuperFamilySSF1182908.5E-27250311IPR003657WRKY domain
SMARTSM007742.3E-38252310IPR003657WRKY domain
PROSITE profilePS5081123.847253311IPR003657WRKY domain
PfamPF031065.5E-26253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-37418492IPR003657WRKY domain
SuperFamilySSF1182901.09E-29424492IPR003657WRKY domain
PROSITE profilePS5081139.008427492IPR003657WRKY domain
SMARTSM007741.6E-39432491IPR003657WRKY domain
PfamPF031064.5E-26433490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDGCVLVGGK LGEGTELNLK VVININGREQ RIIILVIIES FIGSSPPYDQ PAASNLAREP  60
LHGRFEPRPD DSGLQFFLRE RSRLRLPLLL SASRRGHDLT RLGGSRPPPE IPGGGGQGFR  120
WRCGFPVQAE PTNRFDDCSV AAVVYGASRF EPCELSRFAR AAFGMLHQQA LAQVTDQASQ  180
AQSHMHKQSE FPSTLSAAPA GSLPQLPSFT SNLTHQQMPP SMPEPSIMKE SSDLSHADQR  240
SQPSSLVVDK PADDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQITEI  300
IYKGQHNHQP PQPSKRAKDG GNPNGNLNNL GNSELGMEGR VGDLNKMKEG VPAYSFSMKD  360
QESSQATPEH LQGSSDSEEV GDAETRVDER DEDEPEAKRR NTEVRISEPV SSHRTVAEPR  420
IVVQTTSEVD LLDDGYRWRK YGQKIVKGNP YPRSYYKCTS QGCNVRKHVE RAASDPKAVV  480
TTYEGKHNHD VPATRNSSHN TASNSLSQLK PHSAVSDKHT SVREREFGKN DSQPTMLQRF  540
KEELT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-41253493878Probable WRKY transcription factor 4
2lex_A3e-41253493878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111113.10.0probable WRKY transcription factor 3 isoform X1
RefseqXP_028111114.10.0probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-135WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2R6RFI50.0A0A2R6RFI5_ACTCH; WRKY transcription factor
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-135WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]