PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn180221

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HSF

Protein Properties

Length: 469aa MW: 52791.9 Da PI: 5.0164

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn180221	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.3	3.4e-35	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d++++e++sws+++nsfvv+++ efa+ +Lp yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++i+ Achn180221 14 FLLKTYEMVDDSSTDEIVSWSSSKNSFVVWNPPEFARILLPAYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQKHLLKNIH 101 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Achn180221 102 RRK 104 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.5E-59	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.36E-35	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.3E-38	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.2E-19	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-31	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.2E-19	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.2E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MEGSPAGGGG PAPFLLKTYE MVDDSSTDEI VSWSSSKNSF VVWNPPEFAR ILLPAYFKHN 60 NFSSFIRQLN TYGFRKIDPE RWEFANEEFV KDQKHLLKNI HRRKPIHSHS QPQGSAADPE 120 RAAFEEEIDK LSREKTTLEN NLLRFKQQSA AKPQLEDWTQ RVTAIELRQE SLLSFLEKVV 180 QNQNFVEQLS RKLESMDFSA YNKKRRLSQV DYSQQVPENS FVDNQWSSRP DFGNIFPQDF 240 SNKLRLELSP SVSDINFVSH STQSSNENGG SPQRRLSEGY PKDAQRAGGL SFASETLELS 300 DTGTSFTFNM DSALSHKAGG SENPRLLPLQ QNLTSNEEVD GHLSCHLNLT LASSSLQVDK 360 SQYSAKVPQQ SHEIGISPEL RSNANDKEDD DGTLSSSQEA PVKNQGPATS QIRVNDVFWE 420 QFLTERPGIS DAEEASSSFR ENTYDDQEDR QSGRAVSRNG KNTEHLTL*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MEGSPAGGGG PAPFLLKTYE MVDDSSTDEI VSWSSSKNSF VVWNPPEFAR ILLPAYFKHN  60
NFSSFIRQLN TYGFRKIDPE RWEFANEEFV KDQKHLLKNI HRRKPIHSHS QPQGSAADPE  120
RAAFEEEIDK LSREKTTLEN NLLRFKQQSA AKPQLEDWTQ RVTAIELRQE SLLSFLEKVV  180
QNQNFVEQLS RKLESMDFSA YNKKRRLSQV DYSQQVPENS FVDNQWSSRP DFGNIFPQDF  240
SNKLRLELSP SVSDINFVSH STQSSNENGG SPQRRLSEGY PKDAQRAGGL SFASETLELS  300
DTGTSFTFNM DSALSHKAGG SENPRLLPLQ QNLTSNEEVD GHLSCHLNLT LASSSLQVDK  360
SQYSAKVPQQ SHEIGISPEL RSNANDKEDD DGTLSSSQEA PVKNQGPATS QIRVNDVFWE  420
QFLTERPGIS DAEEASSSFR ENTYDDQEDR QSGRAVSRNG KNTEHLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	5	103	15	129	Heat shock factor protein 1
5d5v_B	1e-22	5	103	15	129	Heat shock factor protein 1
5d5v_D	1e-22	5	103	15	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028127145.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-162	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2R6RXQ3	0.0	A0A2R6RXQ3_ACTCH; Heat stress transcription factor A-5 like
STRING	cassava4.1_006311m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-165	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]