PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn177431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 299aa    MW: 32567.3 Da    PI: 4.3359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn177431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-211967149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ie  s+ qvtfskRr+g++KKA ELS LC+++vavi +s+ gk++ +
  Achn177431 19 KKIEKRSQLQVTFSKRRAGLFKKAGELSFLCGVDVAVIAVSPAGKVFSF 67
                689******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.4041171IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-271170IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-241281IPR002100Transcription factor, MADS-box
CDDcd002651.46E-311280No hitNo description
PRINTSPR004043.9E-171333IPR002100Transcription factor, MADS-box
PfamPF003194.9E-232067IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-173348IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-174869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEIKEEKKTT RGRRRIEMKK IEKRSQLQVT FSKRRAGLFK KAGELSFLCG VDVAVIAVSP  60
AGKVFSFGIP SADAVVDRFL GRGSSEDFGG RAGRLRERGR EKAAAEGCGG GGGFWWDRPV  120
GELELGELER YLVALEELTC KVKSRADELA VAAVTEAMEN GLPENFLDYG KDTGGSMVDP  180
FCGFEENYLA MDNGLPENFL DYGKDTGGSM VDPFCGFEEN YLTMENGSPE NILHYGSDTG  240
GAMVNPFCGC GFEENYLSTE NGSPENFLDY GSDTRGAMVD PFCGCGFEDN YFDFGGNY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PHW60.0A0A2R6PHW6_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-19AGAMOUS-like 62