PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn177021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 375aa MW: 41463.1 Da PI: 6.6983

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn177021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.1e-06	283	321	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Achn177021 283 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 321 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-6	282	326	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-9	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-11	282	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MADEFQNWWA TGSSSSSSSS AALTSVVSFG WPAEMVDIKA SSSMDLTLSS QAMDWNHQTL 60 LRGGKAESSF RSVIQEDLNS STKFQSEAGI GSLSQEQWRE KIYSGGSEDS SVSEYKQINR 120 GFLMDQPQFG SQISSTSFQM DPTTFQGLLS SENQQQQSHF ENQPMNNYQY QASYGVNTGE 180 LLPSSWSKFP QFTRTSPPKQ PPHSPLQFSN NAPFWNATSA PMSEVRSSFF PASLQTQLPP 240 PTFDEKSKNT SEVVVKKSSS SSSEASNKRP RNETPSPLPA FKVRKEKMGD RITALQQLVS 300 PFGKTDTASV LSEAIEYIKF LHGQVSVLSN PYMKSGASMQ HQQYILLFLE VSENVTGTIK 360 IIEKVSRELP KKSQ*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MADEFQNWWA TGSSSSSSSS AALTSVVSFG WPAEMVDIKA SSSMDLTLSS QAMDWNHQTL  60
LRGGKAESSF RSVIQEDLNS STKFQSEAGI GSLSQEQWRE KIYSGGSEDS SVSEYKQINR  120
GFLMDQPQFG SQISSTSFQM DPTTFQGLLS SENQQQQSHF ENQPMNNYQY QASYGVNTGE  180
LLPSSWSKFP QFTRTSPPKQ PPHSPLQFSN NAPFWNATSA PMSEVRSSFF PASLQTQLPP  240
PTFDEKSKNT SEVVVKKSSS SSSEASNKRP RNETPSPLPA FKVRKEKMGD RITALQQLVS  300
PFGKTDTASV LSEAIEYIKF LHGQVSVLSN PYMKSGASMQ HQQYILLFLE VSENVTGTIK  360
IIEKVSRELP KKSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852133.1	1e-132	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	1e-48	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2R6QDR8	0.0	A0A2R6QDR8_ACTCH; Transcription factor bHLH123 like
STRING	cassava4.1_007585m	1e-128	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]