PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn172521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 16704.2 Da PI: 10.0594 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ Fs+ L H +H Achn172521 38 FACKICNREFSTFQALGGHRASH 60 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C F + L H+r+H Achn172521 78 HECSICRLEFATGQALGGHMRRH 100 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.83E-8 | 36 | 100 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 37 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-10 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MTMKRMREDG TVEALAMANC LMLLSKVGKS ATSHDRVFAC KICNREFSTF QALGGHRASH 60 KKPRLGESDG SPAKPKRHEC SICRLEFATG QALGGHMRRH KTATTSGGFK ISKSSSGEVE 120 EEEEEAGPVL KRSNSSKRVL CLDLKIAPWW IA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043590.1 | 6e-50 | PREDICTED: zinc finger protein ZAT8 | ||||
TrEMBL | A0A2R6PPY1 | 1e-108 | A0A2R6PPY1_ACTCH; Zinc finger protein | ||||
STRING | XP_010043590.1 | 2e-49 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-34 | C2H2 family protein |