PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 560aa    MW: 61399.1 Da    PI: 6.4106
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-10187243155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Achn171771 187 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 243
                 57*******************4444.2344336655.7799999*************98 PP
2AP249.69.6e-16286337155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Achn171771 286 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 337
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-14187253IPR016177DNA-binding domain
CDDcd000184.65E-19187253No hitNo description
PfamPF008472.0E-8187243IPR001471AP2/ERF domain
SMARTSM003805.6E-22188257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12188252IPR001471AP2/ERF domain
PROSITE profilePS5103217.346188251IPR001471AP2/ERF domain
PRINTSPR003674.0E-6189200IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17286346IPR016177DNA-binding domain
PfamPF008475.0E-10286337IPR001471AP2/ERF domain
CDDcd000181.31E-11286345No hitNo description
SMARTSM003801.6E-31287351IPR001471AP2/ERF domain
PROSITE profilePS5103219.151287345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18287345IPR001471AP2/ERF domain
PRINTSPR003674.0E-6327347IPR001471AP2/ERF domain
SMARTSM003807.8E-4408450IPR001471AP2/ERF domain
PROSITE profilePS510329.374416444IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-6418444IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MKIMPFDGAS GDSQQCYFLD NFYANGWENK AQEDTAQNIA DSTIFTTFLD SQIQQQPPPK  60
LEDFLGNDSS LVRYSDSQTE TQDSSLTHLY DQGGSAYFHD HNDLKPVPAA AGFQAFSGNS  120
GSEVDDSVSV ARTQLGSTES GTELGFSQCP NGALSLGVRA RGSVKALVSV DSESCKKISD  180
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA ARAYDLAALK  240
YWGPTATTNF PVSSYTKEIE EMKHVTKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW  300
QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AAIKFRGVNA VTNFEMNRYD VEAIMKSSLP  360
IGGAAKRLKL SLEAEQKPSL NHDQPPPQCT TSSSINFSTN IHPLAAVPCG VPFDTTAPTE  420
EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV EAIMKSSLPI GGAAKRLKLS LEAEQKPSLN  480
HDQPPPQCTT SSSINFSTNI HPLAAVPCGV PFDTTARYHH NLFHLNTDGA SDLPGPATTT  540
PMTFMPTPAE FFIWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123293.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-170AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2R6R6460.0A0A2R6R646_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGVIT_00s1291g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-168AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]