PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn170441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | RAV | ||||||||
Protein Properties | Length: 361aa MW: 39770 Da PI: 9.863 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.5e-13 | 61 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f + eAa+a++ a+++++g Achn170441 61 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAARAYDIAAQRFRG 109 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99 | 2.8e-31 | 189 | 287 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 f+k+ tpsdv+k++rlv+pk++ae++ ++++ +++ l ++d g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++++l++ Achn170441 189 FEKAVTPSDVGKLNRLVIPKQHAERNfplqSENTSKGVLLNFKDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFHRSTAvHDKQLFI 287 89***************************9778889***************************************************876666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-16 | 61 | 117 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.28E-24 | 61 | 116 | No hit | No description |
Pfam | PF00847 | 3.6E-8 | 61 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-29 | 62 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 62 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 62 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-40 | 185 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.51E-28 | 188 | 277 | No hit | No description |
SuperFamily | SSF101936 | 1.96E-29 | 188 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.972 | 189 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-28 | 189 | 289 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-22 | 189 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MESSCIDEST TSDLLSFSPA RTPPATVKSP PESLCRMGSG TSVVLDAEGG IEAESRKLPS 60 SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEAEAARAY DIAAQRFRGR DAVTNFKPLS 120 ESEADDEAEA AFLTEHSKAE IVDMLRKHTY GDELEQSRRS FGGKKQCKEK ISNASGSDKT 180 IGKATQQLFE KAVTPSDVGK LNRLVIPKQH AERNFPLQSE NTSKGVLLNF KDVAGKVWRF 240 RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD VVSFHRSTAV HDKQLFIDWK VRGDGSSVAG 300 FPVQVQPVHM VRLFGVNIFK VPFTGGVVDS SGGCGGNKRI RELEMLGFGC SKKPRVIGAL 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-54 | 185 | 292 | 10 | 117 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117439.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-145 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A2R6PB85 | 0.0 | A0A2R6PB85_ACTCH; AP2/ERF and B3 domain-containing transcription factor | ||||
STRING | cassava4.1_010157m | 1e-177 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-132 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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