PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn162381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YA | ||||||||
Protein Properties | Length: 148aa MW: 16423.5 Da PI: 10.2617 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.9 | 2e-29 | 54 | 114 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk....pylheSRhkhAlrRpRgsgGrF 58 +ep++VNa Qy++Il+RRq+Rak+e+e+k+ +ksrk pylheSRh hAl+R+Rg+gGrF Achn162381 54 EEPVFVNANQYHGILRRRQSRAKAESENKM-IKSRKlnmqPYLHESRHLHALKRARGCGGRF 114 69***************************7.555543333*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.4E-32 | 52 | 117 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.916 | 53 | 117 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.9E-25 | 55 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 56 | 78 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 91 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGGQAAYSYP DPYYRSIFAS ATYDAQPYPQ QPMVHFQLMG IQQAGVPLPS DAVEEPVFVN 60 ANQYHGILRR RQSRAKAESE NKMIKSRKLN MQPYLHESRH LHALKRARGC GGRFTNLKKN 120 ENQQKVAASG GKSQANKNDL APSESSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 53 | 122 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655736.1 | 1e-73 | PREDICTED: nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q84JP1 | 1e-53 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2R6PYW8 | 4e-94 | A0A2R6PYW8_ACTCH; Nuclear transcription factor Y subunit A-7 like | ||||
STRING | VIT_10s0003g04650.t01 | 6e-73 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6650 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 5e-56 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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