PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn146311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 553aa MW: 59778.2 Da PI: 8.1823 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.1 | 8.2e-14 | 104 | 143 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+skClk+YCeCfa++++C+ C+C +C+N+ e+ Achn146311 104 KQKHCNCKHSKCLKLYCECFANKSYCDG-CNCVNCHNNVEN 143 89**************************.********9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.4E-17 | 103 | 143 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 19.219 | 104 | 196 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-10 | 105 | 140 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 553 aa Download sequence Send to blast |
MEKGEGGDFS PKTDQSDTLP DFPAKKLARQ LDFTGFSGAS GTVVLPDHPH QSPVKPPLPP 60 PQQRLLSTPK QSQRPLPPIR TVKPESPRAR PRTSVEVKDG TPKKQKHCNC KHSKCLKLYC 120 ECFANKSYCD GCNCVNCHNN VENEAARREA VEATLERNPN AFKPKIYGSP HGTRDNRANI 180 LCSENCKCMD CKNFEGSEER QALFHGDHTN SVAYIQQAAN AAITDAIGSS GYGSPPLSKR 240 RKGQELFFGP TDKDSSIHRL AQYQQANHIK ASAHSPSLSS IPVARVNSAA TGPSKFTYRS 300 LLADIIQPQD LKELCSVLTV LSAEAANTLT DQRNVMERQA EDRMESPLAL SAKDRLQSQK 360 ECEVQKAVAE DCSRANQAEK ISPTSSGGAD LSKARPMSPG TLALLCEEQD TMFMAATSPK 420 GLMGHGCNAS SQLPHGQGMT EVYAEQERVV LNKFRDCLNR LITLGEIKET KCSLLARTDS 480 GGLSNCNGAA IARIETKNQQ EPSSNGGVKS TGLPSSATSQ TIHAATIASN NDPLPKIPAE 540 NGDVKPRTEK EM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-17 | 96 | 205 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-17 | 96 | 205 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077343.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Refseq | XP_028077344.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-167 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2R6Q4U1 | 0.0 | A0A2R6Q4U1_ACTCH; Protein tesmin/TSO1-like | ||||
STRING | XP_006451190.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-147 | Tesmin/TSO1-like CXC domain-containing protein |