PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn145961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 318aa    MW: 36412.5 Da    PI: 9.5136
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn145961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.91.8e-29521395103
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   k +++++ +  k+ i+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i rkk
    Achn145961  52 KRWDLVKYD--KSGINWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKNIVRKK 137
                   555565543..457************************************************999.........**********************9 PP

                   XX CS
  HSF_DNA-bind 102 se 103
                   ++
    Achn145961 138 HS 139
                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-3545136IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2551136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-2952136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-2554136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-108597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKKKNTKKGL DRCKLDLDYV IEIAYLRDHP HRNVDLTLLT RASQTRTRKI SKRWDLVKYD  60
KSGINWGKAN NSFIVVDPLD FSQRILPAYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE  120
WFLRGQKHLL KNIVRKKHSR SPYWHKYEEE DDKEILTEIA RLKQEQVVLE QELEGMNKRL  180
EATEKRPQQM MDFLHKVVED PEILPRMILE RDRTKRSTSE KKRRLMMSSS SSSSGGVMSE  240
EGEETTLGAF PPIPSPDLPA TQPAAVGWLF PDTAEVAGGF VEAPPRNFGG DIGYFGGMGG  300
GVEESPPYPF SLLGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-195014121125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043463.12e-98PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV525e-77HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2R6Q4S30.0A0A2R6Q4S3_ACTCH; Heat stress transcription factor C-1 like
STRINGcassava4.1_010201m6e-96(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-68heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]