PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn136681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 376aa MW: 43081.1 Da PI: 7.251

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn136681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.7e-12	74	106	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k+ rr+++NReAAr+sR+RKka++++Le+ Achn136681 74 PPDKVLRRLAQNREAARKSRLRKKAYVQQLETS 106 5799**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.3E-9	73	124	No hit	No description
SMART	SM00338	1.9E-9	73	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-8	75	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.68	75	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-7	77	119	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-29	184	259	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDSPTAQFVT SRRMGIFESI HQISMWEDFK VDGCQIASAS MIVEEDTKID NQSEDSSQGM 60 PRSSYKFHQG ASKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL VQLEQEVERA 120 RQQLYIPTTS YGDPLMLLSN MLNELTREQL KIREYRYDVG QKNMHGITTF EMEYEHWVKE 180 QERQICELRT ALNCHGVDRD LRSLVDGSMN HYSDLFRMKA TAAKADVFYL MYGMWKTSAE 240 RFFSWIGGFR PSELLKILVA QLDLAHQQVV EVNSLRQSCQ QAEDALSQGM DKLQKILAET 300 VAAGQLGEGS YIQQLTLALE KSEALADHIR QETLQQMSRI LTTHQAAQGL LNLGEYCQRL 360 RTLSSLWATR PCEPA*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDSPTAQFVT SRRMGIFESI HQISMWEDFK VDGCQIASAS MIVEEDTKID NQSEDSSQGM  60
PRSSYKFHQG ASKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL VQLEQEVERA  120
RQQLYIPTTS YGDPLMLLSN MLNELTREQL KIREYRYDVG QKNMHGITTF EMEYEHWVKE  180
QERQICELRT ALNCHGVDRD LRSLVDGSMN HYSDLFRMKA TAAKADVFYL MYGMWKTSAE  240
RFFSWIGGFR PSELLKILVA QLDLAHQQVV EVNSLRQSCQ QAEDALSQGM DKLQKILAET  300
VAAGQLGEGS YIQQLTLALE KSEALADHIR QETLQQMSRI LTTHQAAQGL LNLGEYCQRL  360
RTLSSLWATR PCEPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652847.1	1e-167	PREDICTED: transcription factor TGA1 isoform X1
Refseq	XP_010652848.1	1e-167	PREDICTED: transcription factor TGA1 isoform X1
Refseq	XP_019076616.1	1e-167	PREDICTED: transcription factor TGA1 isoform X1
Swissprot	Q39162	1e-144	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2R6R684	0.0	A0A2R6R684_ACTCH; Transcription factor like
STRING	EOX92234	1e-165	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-146	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]