PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn129371

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 430aa MW: 48473.2 Da PI: 10.2531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn129371	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Achn129371 77 FMCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	15.9	3.8e-05	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Achn129371 153 WKCDKCSKKYAVQSDWKAHQKTC 175 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.88E-8	76	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.031	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	77	99	IPR007087	Zinc finger, C2H2
Pfam	PF12171	5.3E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-5	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.88E-8	148	174	No hit	No description
SMART	SM00355	45	153	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MAHGPTTYRE NLGQKISTQT RQVHSHWTRY TASGPKICRF GTFRPAHIFT GWIRPRQDPS 60 AEVVALSPKT LMTTNRFMCE ICNKGFQRDQ NLQLHRRGHN LPWRLRQKTN AEVKKRVYIC 120 PEASCMHHNP VRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HQKTCGTREH 180 KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQAGLMPNM CINMQAQMAD QLMPINTRPN 240 PSMGISEFNN FDPKNTLKSL PQELVPMPFK PMNMAGGMFL TTLGTLFRDP RSVSSSSSSL 300 QISTSNSPSG FNYLQNSING GPISGSTHMS ATALLQKAAQ MGATASNNIN SPMMQKSFGS 360 TMAGPYSKMT VDFLGIGGPR PRNWHEQQQQ QQQRLELEET SGHRTQVMNH FQEQLSQGET 420 AMEKSMWDV*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MAHGPTTYRE NLGQKISTQT RQVHSHWTRY TASGPKICRF GTFRPAHIFT GWIRPRQDPS  60
AEVVALSPKT LMTTNRFMCE ICNKGFQRDQ NLQLHRRGHN LPWRLRQKTN AEVKKRVYIC  120
PEASCMHHNP VRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HQKTCGTREH  180
KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQAGLMPNM CINMQAQMAD QLMPINTRPN  240
PSMGISEFNN FDPKNTLKSL PQELVPMPFK PMNMAGGMFL TTLGTLFRDP RSVSSSSSSL  300
QISTSNSPSG FNYLQNSING GPISGSTHMS ATALLQKAAQ MGATASNNIN SPMMQKSFGS  360
TMAGPYSKMT VDFLGIGGPR PRNWHEQQQQ QQQRLELEET SGHRTQVMNH FQEQLSQGET  420
AMEKSMWDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	149	212	3	66	Zinc finger protein JACKDAW
5b3h_F	2e-33	149	212	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027174023.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9SCQ6	1e-101	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2R6PNX6	0.0	A0A2R6PNX6_ACTCH; Zinc finger protein like
STRING	XP_006480107.1	1e-163	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-89	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]