PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn125541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27484.3 Da PI: 5.7263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.4e-12 | 130 | 172 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Achn125541 130 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKDL 172 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.015 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 127 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-12 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-4 | 130 | 176 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-15 | 130 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 130 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEYTHEHGLL DELLALRPNP LMSDFQIQNN IGQLGFDYFV ENPIFVPPNP SFQDHLSLPF 60 DVQTLGCSFG DVLRFPETKT GTTPFQCSMP IINESDPIHQ SSEAAVTDLK MSERKKRVRK 120 VEGHPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS ILGDTIDYMK DLLERINNLQ 180 EEIEVGSSND ELKLMSICKD LEPNEVLVRN SPKDLEQRAS IGSEEVKQAL LRNAGYEGRG 240 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 136 | KKRVRKVEGHPSKNLMAERRRRK |
2 | 131 | 138 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059786.1 | 4e-59 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 1e-34 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2R6QY56 | 1e-149 | A0A2R6QY56_ACTCH; Transcription factor bHLH93 like | ||||
STRING | VIT_18s0001g08040.t01 | 5e-51 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.2 | 2e-37 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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