PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 413aa    MW: 46082.5 Da    PI: 7.7948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-062833201254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  Achn111891 283 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 320
                 66788899999*****998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-12281338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0019282326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.86E-7283324No hitNo description
Gene3DG3DSA:4.10.280.103.7E-9285328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGEEFQAGVL GSTWWSNSST SFGWPNNISD GSMVFQEMQM MGNIGISSPS SSSTTTTDWN  60
HTLFSGSGRR ENNYNSCMLQ EDMNLRQENG MDCSQIQKEW NLKEFSIVGR QDSNSSINEF  120
NQTSQGFSPM VSTSYGYPST ILQTLFDPDP QPPQSIFDNR TLNYHSTTTC ETNSNGFSPS  180
FEKFAPLMRP SLPKQPPTSP LHVTNWTASN VSPSDIRASS FPSTQARFLA SKPNGEVVQD  240
SCSVGKKSSN SEPVFKRPRI ETPSPLPTFK KWMRIFVDFY QVRKEKLGDR ITALQQLVSP  300
FGKTDTASVL QEAIEYIKFL HDQVNVLSTP YMKNGPPIQH QQSSNKPKDA KGHKQDLRSR  360
GLCLVPISST FPVANQTTID FWTPTFGGSF RIACNSILCN TFFKNKLQGH DE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472307e-60EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635184.11e-147PREDICTED: transcription factor bHLH112 isoform X1
TrEMBLA0A2R6QLP00.0A0A2R6QLP0_ACTCH; Transcription factor bHLH112 like
STRINGVIT_00s0274g00070.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-55bHLH family protein