PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 454aa    MW: 50010.8 Da    PI: 7.6153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-1073100127
                 --S---SGGGGTS.--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                 +kt+lC++f+r+   C++Gd+C++aHg+
  Achn108791  73 WKTSLCSYFRRSNgACSHGDTCRYAHGE 100
                 8**********999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-1469106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-770105IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-572100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.94372101IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-873100IPR000571Zinc finger, CCCH-type
CDDcd005901.32E-4157211No hitNo description
SuperFamilySSF549286.86E-7158211IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.8E-5160211IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF533351.18E-9241359IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.4E-10313358IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.9E-14359392IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.9E-14428452IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAASSEPLKP SPLETSHPNN GHDSTEPPHQ SVPDESQPSN AQFQSTDGVE PGEKTKRADP  60
TDDAEEQSLH PLWKTSLCSY FRRSNGACSH GDTCRYAHGE AELRPRPDSS WDPTSEQSKK  120
LLMAENGEKS TPIEVEREVL MTDALDGDSS DPDLSKCLLN LPMKCSADKL RNFHDEQGIV  180
YKSAKKKKGM TVGFVNFESA EQVKRAMETK NACKACPNGV PLPEWILESR EIGGLPCIFE  240
GILESPLVNG YRNKCEFSVG YSIQGKPTVG FMLGNFRKQN ANLEKKERFC AKIMLVSSVS  300
LFKRQNAGPR EMVKTLAAEK LYSLSGDWAG LGPDTLLFDI CCGTGTIGLT LAHRVGMVIK  360
DLRTHPRLRR LGYISCNPES LVANAIERCT PSTNKTEKGS KNNWGWRNMS SAGLARHRAK  420
SMPTSEPFRP IKATAVDLFP HTPHCELVML LET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132247.19e-83hypothetical protein PHAVU_011G078600g
SwissprotQ8L7S38e-60C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
STRINGXP_007132247.13e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA807488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.14e-62C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]