PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn089081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 1241aa MW: 140193 Da PI: 5.927 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.2 | 1e-29 | 269 | 411 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyW 83 lp+G++F+P+d el+ e+L++k+ + + ++e+i++vd i++++P++Lp +k++ ++++fF++ ++y+tg+rk+r + +W Achn089081 269 LPAGVKFDPSDVELL-EHLAAKCGVGNskphIFIDEFIPTVDreegICYTHPENLP-GAKTDGSSVHFFHRIINAYTTGQRKRRRihnedsmkKEGVRW 365 799************.999999876664566444445666655666**********.55678899*******************75777777444566* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+k v++ +g ++g kk++v+y +++ +k+ k++Wvmh+y+l Achn089081 366 HKTGKTKCVMA-NGLQKGYKKIMVLYrtSKKGSKPDKANWVMHQYHL 411 ***********.999***********5434667778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd13999 | 4.43E-76 | 1 | 223 | No hit | No description |
PROSITE profile | PS50011 | 33.46 | 1 | 227 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 6.3E-29 | 3 | 227 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 4.99E-55 | 25 | 249 | IPR011009 | Protein kinase-like domain |
Pfam | PF07714 | 2.3E-40 | 25 | 223 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
Gene3D | G3DSA:3.30.200.20 | 5.9E-9 | 34 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 5.2E-39 | 75 | 223 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 83 | 95 | IPR008271 | Serine/threonine-protein kinase, active site |
SuperFamily | SSF101941 | 1.44E-32 | 259 | 430 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.221 | 269 | 430 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-12 | 270 | 411 | IPR003441 | NAC domain |
PROSITE profile | PS51295 | 18.071 | 719 | 816 | IPR001890 | RNA-binding, CRM domain |
SuperFamily | SSF75471 | 1.7E-19 | 720 | 814 | IPR001890 | RNA-binding, CRM domain |
SMART | SM01103 | 2.6E-17 | 721 | 805 | IPR001890 | RNA-binding, CRM domain |
Pfam | PF01985 | 1.3E-16 | 721 | 805 | IPR001890 | RNA-binding, CRM domain |
Gene3D | G3DSA:3.30.110.60 | 7.0E-15 | 721 | 814 | IPR001890 | RNA-binding, CRM domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1241 aa Download sequence Send to blast |
MAKICHDKII LSLSQILEDI DIEKKFIGAC KEPVMVIVTE LLQGGTLRKY LLNMRPSCVD 60 IHVAIGFALD ITRAMECLHS HGIIHRDLKP ENLLLTADHK TIKLADFGLA REESLTEMMT 120 AETGTYRWMA PELYSTVTLR HGEKKHYNHK VDAYSFAIVL WELIHNKLPF QGMSNLQAAY 180 AAAFKNTRPS ADDLPVDLAL IVTSCWREDP NARPNFSQIT QMLLKYLSTI SPPEPTIPPG 240 IFTYKNAVLP PKSPGTSSLM HVLHEWPGLP AGVKFDPSDV ELLEHLAAKC GVGNSKPHIF 300 IDEFIPTVDR EEGICYTHPE NLPGAKTDGS SVHFFHRIIN AYTTGQRKRR RIHNEDSMKK 360 EGVRWHKTGK TKCVMANGLQ KGYKKIMVLY RTSKKGSKPD KANWVMHQYH LGTAEDEIEG 420 QFVVSKILYQ LQKQSDNTDS SHVMEDSDLG TIQTVPRTPK TNTPNPPRPR KSFWCDDVTD 480 DYLILPKSSA QEAEFITETS HPSISGPPYK EETETHTWLA GESQAVDGNG DDPLLCDEKL 540 NSYVDLDDLG LNDGPSNDFS RLTPDVPGVD RINPPCGIAN LENLELDAPL DFQLAFHIFV 600 VADSLNVLSS SDVPSKFTTS DVFQSSFQIK SLNLLDGSRE MSTGLGRSMR SKVERRMRKE 660 SGKTLREIRR AKDLRKKLMT DEERLIYNLR RAKKKVALLL QKLKKYELPE LPTPRHDPEL 720 LTPEQLQAYK KIGFRNKNYV PVGVRGVFGG VVQNMHLHWK FHETVQVCCD NFPKEKIKEM 780 ATMIARLSGG IVINIHNVKT IIMFRGRNYR QPKNLIPINT LTKRKALFKA RFEQALESQK 840 LNIKKIEQQL RRKGVNPDDP VALASIQRVA STFFNAIDKK AGSPYVFRED KQFEAIPSTN 900 LQQSEPADDS DQEELDRFIA EIEDAADKEW AAEEAAEKEE FGKIRYLNRE DFGGRFRSSE 960 LLNSEDSDTD IRGGERGLKD ARSGRRRTGD SDNEDEVGVM SDYESDADEH DQAPVKFGKP 1020 RLERGKQNGV VRAHGNEAFR RNAEAKFSEK TLKEDSESED MLSGVEDAMW QSDSEEEQDL 1080 GQASAITNNY KSSSGEEEDY LHVKRYKNGV GVANHFASNA NDFDEAPDQL NLSRVAREKQ 1140 NKNHKANNSD AFDRNAGGKF RGESTKEKYE SEDLFSDSET AMWESDVQED LDSETSRLGT 1200 SDYKSNSEDE DCVMKKDGKD EVNDNNMKSP KQVDEAWESD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4uya_A | 5e-30 | 28 | 223 | 92 | 287 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE MLK4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 346 | 350 | RKRRR |
2 | 347 | 351 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028114759.1 | 0.0 | uncharacterized protein LOC114312677 isoform X1 | ||||
TrEMBL | A0A2R6P9B3 | 0.0 | A0A2R6P9B3_ACTCH; RNA-binding, CRM domain protein | ||||
STRING | VIT_14s0066g00360.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8122 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 3e-69 | NAC domain containing protein 85 |