PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn069971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | CPP | ||||||||
Protein Properties | Length: 639aa MW: 69724.2 Da PI: 8.1598 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.4 | 7.7e-15 | 178 | 217 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ e+ Achn069971 178 KQKHCNCKHSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEN 217 89**************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3e-16 | 262 | 301 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Achn069971 262 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 301 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.6E-19 | 177 | 217 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.165 | 178 | 302 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.5E-12 | 179 | 214 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-20 | 262 | 303 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 265 | 300 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MYQMNLREGF RNSSHKEIYI YKYISIKSCP FIGSPITSNS PKSTTNTMQN LVKGHRQQEN 60 ILYNTVQEKL MEKGEGGDFP PKTDQSDSPS DFPAKKLARQ LDFTGFSSAS AAVVLPDHPQ 120 QSPVKPTPPQ PQPTPQQQLL STPKQSQLPL QSIRPVKPES PRARTRTSVE VKEGTPKKQK 180 HCNCKHSRCL KLYCECFAAG IYCDGCNCVN CHNNVENEAA RREAVEATLE RNPNAFRPKI 240 DGSPHGTRDN REEPGDALVL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF 300 EGREERQALF HGDHTNSVAY IQQAANAAIT GAIGSSGYGS PPLSKKRKGQ ELFFGPTAKD 360 PSIHRLAQYQ QSSIPAARVN SATTGPSKFT YRSLLADIIQ PQDLKELCSV LTVFSAEAGN 420 TLADQRDAME RQAEDRMESS LASSAHDRLQ SQKECEVQKA VADDCSSANH AEKISPTSSD 480 GADLSKARPM SPGTLALMCD EQDTMFMAAA SPKGLMGHGR NTYSQLPHGQ GMTEVYAEQE 540 RVVLTKFRDC LNRLITLGEI KETTCSSLAR TDSGGQSEPI SNSAANARTE TKNQQEPSSN 600 GGAKSTGPPM PATSQTIHEV TIASNNDPPP KFLQKTGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-31 | 170 | 311 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 8e-31 | 170 | 311 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068712.1 | 0.0 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2R6QV03 | 0.0 | A0A2R6QV03_ACTCH; Protein tesmin/TSO1-like | ||||
STRING | XP_006451190.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-170 | Tesmin/TSO1-like CXC domain-containing protein |