PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn067171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | DBB | ||||||||
Protein Properties | Length: 217aa MW: 24151.1 Da PI: 6.2152 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.8 | 1.9e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H Achn067171 4 LCDVCESAAAILFCAADEAALCRSCDDKVH 33 7*************************9998 PP | |||||||
2 | zf-B_box | 29.2 | 1.9e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Achn067171 52 DVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHE 92 5799**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.054 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.02E-5 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 5.1E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 2.52E-5 | 48 | 88 | No hit | No description |
PROSITE profile | PS50119 | 9.414 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-8 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.51E-6 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLASP SDVPRCDICE 60 NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HERYLLMRQR VEFPGDKPSC IDELGPQPCE 120 VGQIRREQNQ LRRPTMRENQ QNHMVSAVPV LDSNIGGKIE NRMIDLNAKP QRPHGQASNN 180 QQDECEDPNN DQQCGSLDDN KYTSVGHDHG HHHHCS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028105100.1 | 1e-104 | B-box zinc finger protein 18 | ||||
Refseq | XP_028105163.1 | 1e-104 | B-box zinc finger protein 18 | ||||
Swissprot | C0SVM5 | 5e-75 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2R6RHJ0 | 1e-131 | A0A2R6RHJ0_ACTCH; B-box zinc finger protein | ||||
STRING | cassava4.1_016170m | 1e-101 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 8e-78 | DBB family protein |