PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn062651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bZIP
Protein Properties Length: 364aa    MW: 39879.1 Da    PI: 5.5988
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn062651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.43.5e-09150200555
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                 kr++r   NR +A rs +RK  +i eLe+kv +L++e ++L  +l + +  
  Achn062651 150 KRAKRILANRQSAARSKERKARYISELERKVLTLQTEATTLSAQLTMFQRD 200
                 9****************************************9998876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-15146210IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519148211IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-10150201No hitNo description
PfamPF001709.3E-8150197IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-10150204No hitNo description
CDDcd147035.44E-22151200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQDPSNSNTN AQKPPMTSFG NPTAAFRSAH HRRAHSEVNF RMPDDLDLGP DPFGGPPGSF  60
DEIGSEDDFF STYMDVEKLG SGSSDVGDCR IDNARGGGEP EEAGDGEKSV RPRHRHSNSV  120
DGSVFMTEAI EAKKAMAPDK LAELWSIDPK RAKRILANRQ SAARSKERKA RYISELERKV  180
LTLQTEATTL SAQLTMFQRD TTGLSNENTE LKLRLQAMEQ QAQLRDALNE ALKHEVARLK  240
VATGEMASPS DAYNFGMPHL LYTQSSFYSQ QPQNGTSDAQ QIQVPQFHPL QSNMINHQHS  300
FLVASQSQSL SEMLQQDSLG RLQGLNINAR GSHLVKSEEP SISASESSSL SVVLTGSFSD  360
IPD*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084122.11e-172transcription factor RF2b-like
SwissprotO228731e-116BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2R6PLP40.0A0A2R6PLP4_ACTCH; Transcription factor RF2b like
STRINGVIT_13s0067g02900.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.17e-88bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]