PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn060161

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 417aa MW: 45687.2 Da PI: 8.8944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn060161	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Achn060161 82 WKCEKCSKKYAVQSDWKAHSKIC 104 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.95E-6	5	28	No hit	No description
SMART	SM00355	1.1	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.055	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.95E-6	77	102	No hit	No description
SMART	SM00355	140	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MATNRFLCEI CNNGFQRDQN LQLHRRGHNL PWKLKQRTSK EIKKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTIFSRA 120 FCDALAEESA RFTSVPTPNT NFRNELVNGS ISIFQAAGNP QFPVAFQLDL VGLEGGQLSM 180 DGLKPRVPMW LDQGNNNSHL NPIGTMANGL PENIFGLSTQ ANVFGNFSSS AALPRVLKEE 240 GENKGNLSET MSSFYFNNQN NQQEQEATPH MSATALLQKA SQMGSTKTSS LFNNSFGLMS 300 SSTPSSSLSR VPSFNSFNQG RSEVHHNLND QMMINNVPDL APASTGNAGG LLWGGDMKSS 360 RNLDRSVCGD QSMTRDFLGV GGGDHGGRPL SQQELAKFAS LGSAMDLSHH FSGSHS*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MATNRFLCEI CNNGFQRDQN LQLHRRGHNL PWKLKQRTSK EIKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTIFSRA  120
FCDALAEESA RFTSVPTPNT NFRNELVNGS ISIFQAAGNP QFPVAFQLDL VGLEGGQLSM  180
DGLKPRVPMW LDQGNNNSHL NPIGTMANGL PENIFGLSTQ ANVFGNFSSS AALPRVLKEE  240
GENKGNLSET MSSFYFNNQN NQQEQEATPH MSATALLQKA SQMGSTKTSS LFNNSFGLMS  300
SSTPSSSLSR VPSFNSFNQG RSEVHHNLND QMMINNVPDL APASTGNAGG LLWGGDMKSS  360
RNLDRSVCGD QSMTRDFLGV GGGDHGGRPL SQQELAKFAS LGSAMDLSHH FSGSHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-28	78	139	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-28	78	139	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069679.1	1e-166	zinc finger protein BALDIBIS-like
Refseq	XP_028069680.1	1e-166	zinc finger protein BALDIBIS-like
Swissprot	Q944L3	7e-88	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A2R6P7I7	0.0	A0A2R6P7I7_ACTCH; Protein indeterminate-domain like
STRING	VIT_06s0004g03070.t01	1e-159	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-77	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]