PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn055461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 855aa    MW: 93747.4 Da    PI: 6.3851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn055461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07450470526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C  Gd+C +aHg
  Achn055461 450 PCPEFRK-GACAKGDSCEYAHG 470
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.14E-8100138IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.9E-8101139IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:1.25.40.208.0E-17215371IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-15216346IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0065257287IPR002110Ankyrin repeat
PROSITE profilePS5029716.282257366IPR020683Ankyrin repeat-containing domain
CDDcd002041.90E-14259366No hitNo description
PfamPF127962.2E-7262359IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0087292324IPR002110Ankyrin repeat
PROSITE profilePS5008811.14292327IPR002110Ankyrin repeat
SMARTSM003563.8E-4445471IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4449471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.643450472IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5450470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4477508IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925480504IPR000571Zinc finger, CCCH-type
SMARTSM0035620480503IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MVEDVLVWIG ARLGVVCSRY LSFTGMSISM ETVLEFKCFL RKRLFTLIND LPTIFEVVTE  60
RKPVKDKPSL DSGSKSRISS GTKRSNDGRS KTSVKLDDKN YEEDEDEHGE TFCGSCGANY  120
SANEFWIGCD ICERWFHGNE CTVECSYRYA FALLYWAREI HALLVASVDD TSTAQPFDPG  180
FMCRGSKSKP NPSNLTMEGE NQEHRNGVFS ETSHLLELAA SDDLGGFKFA VEDKGLGVDE  240
ASMWYGRRIG SKKMGFEERT PLMIASMYGS AEVLKFIIGI GTADVNRACG SDGATALHCV  300
ASGGSGSSVE VVKLLLDASA DANSIDANGN KPGDLIAHSF NSSSNSRRKM LEMLLKGANA  360
VSIDQNTSQE VNPIPQLPKA GIEKKEYPID VPLPDINNGV YSTDEFRMYS FKVKPCSRAY  420
SHDWTECPFV HPGENARRRD PRKYHYTCVP CPEFRKGACA KGDSCEYAHG VFESWLHPAQ  480
YKTRLCKDET GCSRKVCFFA HRAEELRPLY ASTGSALPSP KSLSSGAVDM TTLSPMALCS  540
SAMLMPPTST PPMSPVACSS PMGGNVWQNK DNLNLTPPTL QLPGSRLKTA SSARDLELEM  600
ELLGLESLRN QQRQQLIDEL SGLSSPYSKI GELKPTNLDD VFGSLDPSLL YQLQGLSPKV  660
STSTTTQLQS PTSHQMRQNM NQLRSSYPTN LSSSPVRKTP NNGFDSSGTV MNSRMAAFAK  720
RSQSFIDRGA VNHHRPGGLA LTAAANSASM MSSNLSNWSS PDGKLDWGFN GEEHNKLKKS  780
ASFGFRSDNG TKPQTAMAPS SLDEPDVSWV HSLVKDVSSV GTGLYSSEQR HEGFNETLPP  840
WVEQFYIEQE QIMA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028067511.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2R6RR830.0A0A2R6RR83_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOY177610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-163C3H family protein