PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn054841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bZIP
Protein Properties Length: 343aa    MW: 38114.3 Da    PI: 6.6524
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn054841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.91e-08150201556
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                 +r++r   NR +A+rs +RK  ++ eLe+kv +L++e ++L  +l+  +   
  Achn054841 150 RRAKRILANRQSASRSKERKARYMSELERKVLNLQTEATTLSAQLSLFQRDT 201
                 699***************************************9998776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-15146210IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.553148211IPR004827Basic-leucine zipper domain
PfamPF001703.9E-7150200IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-9150204No hitNo description
SuperFamilySSF579597.23E-10150201No hitNo description
CDDcd147037.61E-20151200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MQDPSKSNPN SSNQNVQKLP TMTSATTSFG NVFRSGQHRR AHSEVNFRLP EDLDLASDPF  60
CWPLSGSFDE IGSEDDLLCT YMDMEKFGSG TAPDCGGGVA AESSEGERID RPRHRHSNSV  120
DGSIRLSESI EAKKAMAPDK LAELWTIDPR RAKRILANRQ SASRSKERKA RYMSELERKV  180
LNLQTEATTL SAQLSLFQRD TTGLSNENTE LKLRLQAMEQ QAQLRDALNK ALKQDVERLK  240
IATGELMSSS DSYNFGMQHL PYTQSSFYSQ QPQQGQNDPH HTQMPQFHPL QSNMLNHHHS  300
LLLASQSQVL SEMQGLDINA RGSHFVKAEG PSVSASESSG MF*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084122.11e-158transcription factor RF2b-like
SwissprotO228731e-109BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2R6RR480.0A0A2R6RR48_ACTCH; Transcription factor RF2b like
STRINGVIT_13s0067g02900.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.14e-99bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]