PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn041011

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 224aa MW: 24964.9 Da PI: 5.8406

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn041011	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	103	118	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++Cp C k+F+r n+ Achn041011 103 FSCPVCYKTFNRYNNM 118 89********997765 PP
2	zf-C2H2	15.9	3.8e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Achn041011 146 FMCRKCGKPFAVSGDWRTHEKNC 168 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-4	103	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.25E-6	132	166	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-5	132	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKKEALPLLS LSPTRPDERQ EPPSSCFAMD VDDESVTVAL HIGLPNPSSA DLASLLSSND 60 NSCSNDQISD KDGDVGDVSI NRLNKGQYWI PTPSQILIGP TQFSCPVCYK TFNRYNNMQG 120 AETISITQDF RTLQTHYKRK HGIKPFMCRK CGKPFAVSGD WRTHEKNCGK LWYCICGSDF 180 KHKRSLKDHI KAFGHGHGAY GIEGFEEEDE PASEVEQDDE SMQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	2e-68	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277537.1	1e-109	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	4e-93	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2R6Q4M8	1e-150	A0A2R6Q4M8_ACTCH; Zinc finger protein
STRING	VIT_08s0007g08070.t01	1e-109	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	5e-87	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]