PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn032761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 275aa    MW: 31029.9 Da    PI: 5.2887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn032761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09159203655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +++ r+RR++i ++ +eL +l+P         K++ ae+ + A +YIk+Lq
  Achn032761 159 SIAARQRRRKITDKTQELGKLIPGvH------KMNTAEMFQAAFKYIKYLQ 203
                 6788********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.919153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-12154214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-12156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-10156206No hitNo description
SMARTSM003531.3E-9159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-7159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALSYYSNWD TRSSSFPQAQ VLELPPMAMD LIGLQEHFTY PDACFDPLLL DPNQYSSFLS  60
ENYYPHFDNS TNISHSSDLF PPQPQELIHS YSYPYPYPKR QKEDNYHAVE LELTVPPCLV  120
DDGFIMPNPP DLTLPAEFSG PPGTVVVKRG GSRSLSAQSI AARQRRRKIT DKTQELGKLI  180
PGVHKMNTAE MFQAAFKYIK YLQAQVGVLQ SIVSIQGNEE PLHTQELHAL ATSPNIQEKL  240
YSSENCLVPK QFVQTLAHDH EFQDLDQLIQ NRSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088160.12e-63transcription factor bHLH53-like
TrEMBLA0A2R6Q5T00.0A0A2R6Q5T0_ACTCH; Transcription factor bHLH53 like
STRINGVIT_10s0092g00030.t013e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-22bHLH family protein