PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn026891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 330aa    MW: 36558.4 Da    PI: 10.2006
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn026891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix643.3e-2034129186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                 +W+++e+ aLi+a+r+++ +lrrg+l++p+W+ev++++        + +   ++++qC++k+e+l+kry+++ +++      ++  s++++f++++
  Achn026891  34 CWSHDETAALIDAYRDKWYSLRRGNLRAPHWQEVADAVtarcppppSGGNPPKTAVQCRHKMEKLRKRYRAELQRALTFpkGKRFASSWVHFNRMD 129
                 8*******************************************97667779*******************99887554213677889*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-2233131No hitNo description
SMARTSM005951.6E-1042136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASSSSPPQT HHLALPAPPN PSSAVSARRL PPPCWSHDET AALIDAYRDK WYSLRRGNLR  60
APHWQEVADA VTARCPPPPS GGNPPKTAVQ CRHKMEKLRK RYRAELQRAL TFPKGKRFAS  120
SWVHFNRMDS MEKGPSNSTT VVEDEDNDQE EDDDDEDLYQ SVKRGVPPNR AVYESMSNGI  180
GSRNGVRIKF SGKSSVPPKM YSKFDGKPYT HVGASPNLAS ARVVGDGFSK NSVLGKRRGG  240
DGGEGVGRKR EGEPVAEMVA AVKALGDGIV RMERMKMDMA REVEAMRMEM EMKRTEMILD  300
SQQRIVEAFA KAFSEKRNKK AKRMSSPEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097449.11e-121trihelix transcription factor ASIL1-like
TrEMBLA0A2R6QPK10.0A0A2R6QPK1_ACTCH; Trihelix transcription factor
STRINGPGSC0003DMT4000042691e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-45Trihelix family protein