PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn017831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 494aa    MW: 54782.5 Da    PI: 6.4511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn017831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13347393455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Achn017831 347 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 393
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4449227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.18E-18342412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.13343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-14346397No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17347412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGEKFWFSEE DRGMVESVLG SEAFEFLLAS ATGKVLSEFV SSAGDLGVQQ ELCKIVEASN  60
WSYAIFWQVT KSKSGNSALI WGDGHCREPK GSEVETGSGL GDRKLEVGDR RKRVLQKLHA  120
CFGGLEEDNF AAKLDSVSDV EMFYLTSMYY SFPFDKPSSP SQSFNTGRVI WASNTKSCSE  180
HYQSRSYLAN LARFETVVFV PLKSGVVEVG SVNSVSEEPN LIRMVKTTLG GPLPVQGKVV  240
PKIFGHELSL GGSKTRSMTI SFSPKVEDDS GFTSESYELQ AVSTNQVYGN SSNGYQNGGE  300
SKLFPQINQV NVGDLEQGQD DMLIQQDEKK PRKRGRKPAN GREEPLNHVE AERQRREKLN  360
QRFYALRAVV PNISKMDKAS LLGDAISYIT ELQGKIRLLE TEKHMADNKQ QQCNVPEIDF  420
QARHEDAVVQ VSCPLDSHPI SRVIKTFREH QVTAQESKVS TTENGEIVHT FSIRTQSGAA  480
EHLKEKLVAS LSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29341415276Transcription factor MYC2
5gnj_B1e-29341415276Transcription factor MYC2
5gnj_E1e-29341415276Transcription factor MYC2
5gnj_F1e-29341415276Transcription factor MYC2
5gnj_G1e-29341415276Transcription factor MYC2
5gnj_I1e-29341415276Transcription factor MYC2
5gnj_M1e-29341415276Transcription factor MYC2
5gnj_N1e-29341415276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336KKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107222.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2R6QU120.0A0A2R6QU12_ACTCH; Transcription factor bHLH3 like
STRINGXP_006479569.10.0(Citrus sinensis)
STRINGXP_006443887.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-163bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]