PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn014211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 391aa    MW: 44526.2 Da    PI: 6.3383
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn014211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.91.4e-23279362186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+ev+aLi++r+ +++++r+g  k + W+ev+  ++  g+ rs+k+Ckekwen+nk+ ++++e+ kk+ +++ +tcpyf +l+
  Achn014211 279 RWPKSEVQALITVRTALDHKFRKG-PKSAVWDEVAVGLSNMGYIRSAKKCKEKWENINKYRRRTTENGKKH-PDNNKTCPYFCELD 362
                 8**********************9.8999******************************888888888887.88999*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.46E-19278342No hitNo description
PfamPF138375.3E-17278362No hitNo description
PROSITE profilePS500906.841279335IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEVFAADRQI SNDVADFPVH LTPFPDAVNM LYDDLTAEIR PPEIEHRSQL PPQKLRPIRC  60
NGRILQEHSD PSVEKTAGFD ERMLGYNGEL GFLTRSSPEC LGDSGGVVCG NSCPIERMKT  120
EMNSECKNLI SEAEGQLFEA DLSSSSDEDG ASSEAMTEPS SSKRKRKTRK KLELFLENIT  180
RKVIQKQEQL HKQLIEMVEK MERERIIREV AWQKQEIERV KKDEETRAEE RSRNLALISF  240
IQDFLGHEIQ IPKSGEASYF EKDEGGITKD LGCDSCNKRW PKSEVQALIT VRTALDHKFR  300
KGPKSAVWDE VAVGLSNMGY IRSAKKCKEK WENINKYRRR TTENGKKHPD NNKTCPYFCE  360
LDILYKNGLI NPGNASHSIK NENEDKSAEQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076499.11e-169trihelix transcription factor GT-2
TrEMBLA0A2R6Q9S70.0A0A2R6Q9S7_ACTCH; Trihelix transcription factor GT-2 like
STRINGXP_009771160.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-50Trihelix family protein