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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G51910.1 |
Common Name | MJM18.6, TCP19 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
TCP |
Protein Properties |
Length: 293aa MW: 31460.4 Da PI: 7.5477 |
Description |
TCP family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 117.6 | 1.6e-36 | 50 | 122 | 1 | 73 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73
+a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++
AT5G51910.1 50 PAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAV 122
5899*************************************************************88888444 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0031347 | Biological Process | regulation of defense response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR 60 HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL LERAEPAIIE ATGTGTVPAI 120 AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT 180 ASNYGVNILN VNTQGFVPFW PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS 240 YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB025623 | 0.0 | AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18. |
GenBank | AK118579 | 0.0 | AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01. |
GenBank | BT008779 | 0.0 | BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection. Science, 2002. 296(5565): p. 141-5 [PMID:11910074] - Vandepoele K,Simillion C,Van de Peer Y
Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice. Trends Genet., 2002. 18(12): p. 606-8 [PMID:12446138] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Nawy T, et al.
Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell, 2005. 17(7): p. 1908-25 [PMID:15937229] - Aguilar-Martínez JA,Poza-Carrión C,Cubas P
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell, 2007. 19(2): p. 458-72 [PMID:17307924] - Koo J, et al.
A GUS/luciferase fusion reporter for plant gene trapping and for assay of promoter activity with luciferin-dependent control of the reporter protein stability. Plant Cell Physiol., 2007. 48(8): p. 1121-31 [PMID:17597079] - Skinner DJ,Gasser CS
Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. BMC Plant Biol., 2009. 9: p. 29 [PMID:19291320] - Mukhtar MS, et al.
Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science, 2011. 333(6042): p. 596-601 [PMID:21798943] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] - Danisman S, et al.
Analysis of functional redundancies within the Arabidopsis TCP transcription factor family. J. Exp. Bot., 2013. 64(18): p. 5673-85 [PMID:24129704] - Mar
Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Plant Physiol., 2014. 166(2): p. 1022-32 [PMID:25118255] - Wang X, et al.
TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana. Plant J., 2015. 82(1): p. 151-62 [PMID:25702611]
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