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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G41920.1 |
Common Name | MJC20.2, SCL23 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 405aa MW: 44893.1 Da PI: 5.8629 |
Description |
GRAS family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 383.4 | 2.7e-117 | 41 | 400 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98
+lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf++AL++r+ + s+ ++ l+ ++ + +s++ ++al++++ vsP++kfsh+ta
AT5G41920.1 41 LSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISsYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTA 138
689************************************************9997889999*********999************************* PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
NqaI +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++ s+RiTg+gs s++ l +tg+rLa+fA++l++pfef+++ + +++++L++
AT5G41920.1 139 NQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLAT 232
***************************************************....9**************************866688899******* PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
++gEa++V+++ hrl+d +++ + +L+++++l+P++++vveqe+++ +++sFl rf+eal+yysalfd+l +l++es er +vE+ +lg e
AT5G41920.1 233 RQGEAVVVHWMQ--HRLYDVTGNNLE----TLEILRRLKPNLITVVEQELSYdDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTE 324
***********9..****88888777....**********************8999****************************************** PP
GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
i+n+va+ g + r+ +kW+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
AT5G41920.1 325 IRNIVAHGGGR-RK----RMKWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWK 400
*******9997.34....467***********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048366 | Biological Process | leaf development |
GO:0090610 | Biological Process | bundle sheath cell fate specification |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS 60 TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA CSPLSEKPLT VVQSQKIFSA 120 LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR 180 SIRITGFGSS SDLLASTGRR LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV 240 HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD 300 ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA 360 TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK SQPFD
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Function -- GeneRIF ? help
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- Mutations in three GRAS family transcription factors, SHORT-ROOT (SHR), SCARECROW (SCR) and SCARECROW-LIKE 23 (SCL23), affect BS cell fate in Arabidopsis thaliana.
[PMID: 24517883] - Data show that SCARECROW-LIKE23 (SCL23) is a mobile protein that controls movement of SHORT-ROOT (SHR) and acts redundantly with SCARCROW (SCR) to specify endodermal fate in the root meristem.
[PMID: 26415082] - results provide new insights into the regulatory role of the SHR-SCR-SCL23 network in the endodermis development in both roots and shoots.
[PMID: 27353361]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB017067 | 0.0 | AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20. |
GenBank | BT029760 | 0.0 | BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Bolle C
The role of GRAS proteins in plant signal transduction and development. Planta, 2004. 218(5): p. 683-92 [PMID:14760535] - Tian C,Wan P,Sun S,Li J,Chen M
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol., 2004. 54(4): p. 519-32 [PMID:15316287] - Gao MJ,Parkin I,Lydiate D,Hannoufa A
An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol. Biol., 2004. 55(3): p. 417-31 [PMID:15604690] - Popescu SC, et al.
Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] - Lee MH, et al.
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol., 2008. 67(6): p. 659-70 [PMID:18500650] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Cui H,Kong D,Liu X,Hao Y
SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J., 2014. 78(2): p. 319-27 [PMID:24517883] - Long Y, et al.
SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement. Plant J., 2015. 84(4): p. 773-84 [PMID:26415082] - Yoon EK, et al.
Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]
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