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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G38860.1 |
Common Name | BHLH141, BIM3, EN127, K15E6.40, K15E6.7 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
bHLH |
Protein Properties |
Length: 298aa MW: 33950.3 Da PI: 5.5977 |
Description |
BES1-interacting Myc-like protein 3 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 56.9 | 3.7e-18 | 35 | 86 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq
AT5G38860.1 35 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 86
899*************************6..4********************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006351 | Biological Process | transcription, DNA-templated |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MNSHDIDDQL EADVYSNLPS RNDSSTGRRN RNSCRSKHSE TEQRRRSKIN ERFQSLMDII 60 PQNQNDQKRD KASFLLEVIE YIHFLQEKVH MYEDSHQMWY QSPTKLIPWR NSHGSVAEEN 120 DHPQIVKSFS SNDKVAASSG FLLDTYNSVN PDIDSAVSTK IPEHSPVSAV SSYLRTEPSL 180 QFVQHDFWQP KTSCGTINCF TNELLTSDEK TSASLSTVCS QRVLNTLTEA LKSSGVNMSE 240 TMISVQLSLR KREDREYSVA AFASEDNGNS IADEEGDSPT ETRSFCNDID HSQKRIRR
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Functional Description ? help
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Source |
Description |
UniProt | Positive brassinosteroid-signaling protein. |
Interaction -- BIND ? help
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Source |
Intact With |
Description |
BIND | AT1G19350 | An unspecified isoform of BES1 interacts with BIM3. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ630499 | 0.0 | AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860. |
GenBank | BT033131 | 0.0 | BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] - Gong W, et al.
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol., 2004. 135(2): p. 773-82 [PMID:15208423] - Yin Y, et al.
A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell, 2005. 120(2): p. 249-59 [PMID:15680330] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Cifuentes-Esquivel N, et al.
The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings. Plant J., 2013. 75(6): p. 989-1002 [PMID:23763263]
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