PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G18550.1 | ||||||||
Common Name | T28N17.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 49463.9 Da PI: 6.85 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 53 | 78 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ AT5G18550.1 53 DEPDCIYYLRTGVCGYGSRCRFNHPR 78 6899********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+rtGtCk+G++Ck++H++ AT5G18550.1 99 GQPVCQHFMRTGTCKFGASCKYHHPR 124 5789********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.5e-12 | 147 | 171 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG+Ck+G++C+++H+ AT5G18550.1 147 GEKECSYFMRTGQCKFGSTCRYHHP 171 7899********************9 PP | |||||||
4 | zf-CCCH | 39.8 | 7.4e-13 | 302 | 327 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G +C+F+H++ AT5G18550.1 302 EQPECQYFMRTGDCKFGTSCRFHHPM 327 5799********************95 PP | |||||||
5 | zf-CCCH | 33.7 | 6e-11 | 349 | 371 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +fa+ G+Ck+G+ CkF H+ AT5G18550.1 349 VPCTHFAQHGICKFGPACKFDHS 371 79********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-4 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 102 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 151 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 348 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 348 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 350 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MERYGGAGED ESRSDPSHEW SAQGTETGIE ASMWRLGLRG GGGGGETFPE RPDEPDCIYY 60 LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERMGQ PVCQHFMRTG TCKFGASCKY 120 HHPRQGGGGD SVTPVSLNYM GFPLRPGEKE CSYFMRTGQC KFGSTCRYHH PVPPGVQAPS 180 QQQQQQLSAG PTMYPSLQSQ TVPSSQQYGV VLARPQLLPG SYVQSPYGYG QMVLPPGMVP 240 YSGWNPYQAS VSAMPSPGTQ PSMGTSSVYG ITPLSPSAPA YQSGPSSTGV SNKEQTFPQR 300 PEQPECQYFM RTGDCKFGTS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC 360 KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPSSLGT LAPSSSSDQC TELISSSSIE 420 PITTTTGGSE TVAAGVSSMT SDVSHPEPAE TNKGDSASNE AKTSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.22535 | 0.0 | floral meristem| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79516212 | 0.0 | ||||
Genevisible | 249991_at | 0.0 | ||||
Expression Atlas | AT5G18550 | - | ||||
AtGenExpress | AT5G18550 | - | ||||
ATTED-II | AT5G18550 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G18550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G18550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230175 | 0.0 | AK230175.1 Arabidopsis thaliana mRNA for zinc finger like protein, complete cds, clone: RAFL22-89-O03. | |||
GenBank | BT010886 | 0.0 | BT010886.1 Arabidopsis thaliana At5g18550 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197356.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q6NPN3 | 0.0 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A178U784 | 0.0 | A0A178U784_ARATH; Uncharacterized protein | ||||
STRING | AT5G18550.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 | Representative plant | OGRP2865 | 11 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT5G18550.1 |
Entrez Gene | 831973 |
iHOP | AT5G18550 |
wikigenes | AT5G18550 |