PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G09410.3 | ||||||||
Common Name | CAMTA1, EICBP.B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CAMTA | ||||||||
Protein Properties | Length: 1066aa MW: 121074 Da PI: 6.5155 | ||||||||
Description | ethylene induced calmodulin binding protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.6 | 1.2e-53 | 81 | 188 | 2 | 108 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 l+e ++rwl+++ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt+rE+hekLKvg+++vl+cyYah+e n++fqrrc AT5G09410.3 81 LSEaQHRWLRPTEICEILQNYHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIREAHEKLKVGSIDVLHCYYAHGEANENFQRRC 178 45559********************************************************************************************* PP CG-1 99 ywlLeeelek 108 yw+Le+ + + AT5G09410.3 179 YWMLEQYYYR 188 *****98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.304 | 77 | 233 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.8E-79 | 80 | 228 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-45 | 83 | 185 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-4 | 446 | 550 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 8.87E-15 | 471 | 557 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.2E-4 | 471 | 546 | IPR002909 | IPT domain |
Pfam | PF12796 | 3.7E-7 | 653 | 731 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.8E-18 | 654 | 766 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.624 | 654 | 765 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.95E-19 | 655 | 765 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.33E-14 | 660 | 763 | No hit | No description |
SMART | SM00248 | 0.0029 | 704 | 733 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.22 | 704 | 736 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 8.6 | 879 | 901 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.327 | 880 | 909 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.2E-7 | 880 | 929 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.0035 | 883 | 900 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 902 | 924 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.395 | 903 | 927 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.7E-4 | 905 | 924 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1066 aa Download sequence Send to blast |
MARKKKSVSF SHLDIARNEG NKIISFSVHA YSDRLGFVDS LFDYESLRSL LVDFWVYPSM 60 VDRRSFGSIT PPLQLDMEQL LSEAQHRWLR PTEICEILQN YHKFHIASES PTRPASGSLF 120 LFDRKVLRYF RKDGHNWRKK KDGKTIREAH EKLKVGSIDV LHCYYAHGEA NENFQRRCYW 180 MLEQYYYRKA SSHWVLVATL SLFSFGYLRP SWVRHLMHIV FVHYLEVKGN RTSIGMKENN 240 SNSVNGTASV NIDSTASPTS TLSSLCEDAD TVLVQGIVNK QVPSYDHLLN LKLEIAMVGH 300 LLLACVMFHR FMGTESEKMQ PSNTDSMLVE ENSEKGGRLK AEHIRNPLQT QFNWQDDTDL 360 ALFEQSAQDN FETFSSLLGS ENLQPFGISY QAPPSNMDSE YMPVMKILRR SEDSLKKVDS 420 FSKWAIKELG EMEDLQMQSS RGDIAWTTVE CETAAAGISL SPSLSEDQRF TIVDFWPKSA 480 KTDAEVEVMV IGTFLLSPQE VTKYNWSCMF GEVEVPAEIL VDGVLCCHAP PHTAGHVPFY 540 VTCSNRFACS EVREFDFLSG STQKINATDV YGTYTNEASL QLRFEKMLAH RDFVHEHHIF 600 EDVGDKRRQI SKIMLLKEEK EYLLPGTYQR DSTKQEPKGQ LFRELFEEEL YIWLIHKVTE 660 EGKGPNILDE DGQGILHFVA ALGYDWAIKP VLAAGVNINF RDANGWSALH WAAFSGREET 720 VAVLVSLGAD AGALTDPSPE LPLGKTAADL AYANGHRGIS GFLAESSLTS YLEKLTVDSK 780 ENSPANSCGE KAVQTVSERT AAPMTYGDVP EKLSLKDSLT AVRNATQAAD RLHQVFRMQS 840 FQRKQLCDIG DDEKIDISDQ LAVSFAASKT KNPGQGDVSL SCAATHIQKK YRGWKKRKEF 900 LLIRQRIVKI QAHVRGHQVR KQYRTVIWSV GLLEKIILRW RRKGNGLRGF KRNAVAKTVE 960 PEPPVSAICP RIPQEDEYDY LKEGRKQTEE RLQKALTRVK SMVQYPEARD QYRRLLTVVE 1020 GFRENEASSS ASINNKEEEA VNCEEDDFID IESLLNDDTL MMSISP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.26762 | 0.0 | flower| seed| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 245910_at | 0.0 | ||||
Expression Atlas | AT5G09410 | - | ||||
AtGenExpress | AT5G09410 | - | ||||
ATTED-II | AT5G09410 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During leaf developlement, expressed in young leaf primordia, hydathodes of young leaf tips, hydathodes of the lobes in maturating leaves and lamina within the minor veins in adult leaves. During flower development, expressed in developing stamens, germinating pollen grains, ovules and developing seeds. {ECO:0000269|PubMed:20383645}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00501 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G09410.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G09410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228740 | 0.0 | AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190267.1 | 0.0 | ethylene induced calmodulin binding protein | ||||
Swissprot | Q9FY74 | 0.0 | CMTA1_ARATH; Calmodulin-binding transcription activator 1 | ||||
TrEMBL | F4KCL4 | 0.0 | F4KCL4_ARATH; Ethylene induced calmodulin binding protein | ||||
STRING | AT5G09410.3 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 | Representative plant | OGRP562 | 15 | 65 |
Link Out ? help Back to Top | |
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Phytozome | AT5G09410.3 |
Entrez Gene | 830800 |
iHOP | AT5G09410 |
wikigenes | AT5G09410 |