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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT4G37850.1 |
Common Name | BHLH25, EN29, T28I19.130 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
bHLH |
Protein Properties |
Length: 328aa MW: 37702.8 Da PI: 6.4541 |
Description |
bHLH family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.3 | 5e-12 | 152 | 198 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ ++f L l+P + kK++Ka++L A ++Ik+Lq
AT4G37850.1 152 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 198
699************************.....9******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP 60 KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN DMEHEYSPTY LNSIFSPKLE 120 AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK 180 MDKASVLGDA LKHIKYLQER VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG 240 FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT 300 IIAKKESDFD MTLMDVVKSL RSALSNFI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-13 | 152 | 208 | 8 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 156 | 161 | ERKRRE |
2 | 157 | 162 | RKRREK |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Function -- GeneRIF ? help
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- Two Arabidopsis basic helix-loop-helix transcription factors bHLH25 and bHLH27 positively influence cyst nematode parasitism.
[PMID: 21223395]
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF488567 | 0.0 | AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] - Stepanova AN,Yun J,Likhacheva AV,Alonso JM
Multilevel interactions between ethylene and auxin in Arabidopsis roots. Plant Cell, 2007. 19(7): p. 2169-85 [PMID:17630276] - Chini A, et al.
The JAZ family of repressors is the missing link in jasmonate signalling. Nature, 2007. 448(7154): p. 666-71 [PMID:17637675] - Jin J,Hewezi T,Baum TJ
The Arabidopsis bHLH25 and bHLH27 transcription factors contribute to susceptibility to the cyst nematode Heterodera schachtii. Plant J., 2011. 65(2): p. 319-28 [PMID:21223395] - Tominaga-Wada R,Iwata M,Nukumizu Y,Wada T
Analysis of IIId, IIIe and IVa group basic-helix-loop-helix proteins expressed in Arabidopsis root epidermis. Plant Sci., 2011. 181(4): p. 471-8 [PMID:21889054]
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