PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G35610.1

Common Name

F8D20.120

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 271aa MW: 28510.5 Da PI: 4.6729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G35610.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.8e-05	139	160	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg+ F ++ H+r H AT4G35610.1 139 VCHICGRGFGSWKAVFGHMRAH 160 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSNPNPEKTK VDVTEEEKEE SDEQWSDEET NMREIVLGLP ALNISSRIFG ESSSVVEEDA 60 EKARLNEQAV LAAGLILAAA EEAVMKGMNE GSGSGGKKKS RPRISTQTDD EGDGLGEGEA 120 KKPKKKAKEL THPPKGPPVC HICGRGFGSW KAVFGHMRAH RDRNYQGFLP PPTFSAGAER 180 FVIPGLRSAF TIATVGGGSS GGVAVGGRSS GDFSGSGGGD APGSEGGRGS GIDLNVEPVE 240 QVEEATESGC IAKFDLNKSP PKDEEEEDKP K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	PKKKAKE

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G35610
AtGenExpress	AT4G35610

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G35610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G35610

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	0.0	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195286.1	0.0	zinc finger (C2H2 type) family protein
TrEMBL	O81793	0.0	O81793_ARATH; Zinc finger (C2H2 type) family protein
STRING	AT4G35610.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41
Representative plant	OGRP11290	3	5

Link Out ? help Back to Top
Phytozome	AT4G35610.1
Entrez Gene	829713
iHOP	AT4G35610
wikigenes	AT4G35610

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Bae MS,Cho EJ,Choi EY,Park OK Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J., 2003. 36(5): p. 652-63 [PMID:14617066] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668] Rehrauer H, et al. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol., 2010. 152(2): p. 487-99 [PMID:20032078] Causier B,Ashworth M,Guo W,Davies B The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol., 2012. 158(1): p. 423-38 [PMID:22065421]