|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
AT4G27950.1 |
Common Name | CRF4, ERF066, T13J8.60 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
Family |
ERF |
Protein Properties |
Length: 335aa MW: 38447.6 Da PI: 4.358 |
Description |
cytokinin response factor 4 |
Gene Model |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ kl+g
AT4G27950.1 116 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFATAEEAAIVYDNAAIKLRG 166
59********.**********743...5*************************99 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0042991 | Biological Process | transcription factor import into nucleus |
GO:0048366 | Biological Process | leaf development |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE 60 EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN VDSTVQKPSV SGQNQKKYRG 120 VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE 180 PVQEQEQEPE SNMSVSISES MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE 240 QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM 300 LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
|
Functional Description ? help
Back to Top |
Source |
Description |
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. |
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Function -- GeneRIF ? help
Back to Top |
- Data indicate that mutants lacking expression of cytokinin response factor 4 (CRF4) were more sensitive to freezing.
[PMID: 26650835]
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AL035524 | 0.0 | AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project). |
GenBank | AL161572 | 0.0 | AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. |
GenBank | BT033088 | 0.0 | BT033088.1 Arabidopsis thaliana unknown protein (At4g27950) mRNA, complete cds. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] - Rashotte AM, et al.
A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(29): p. 11081-5 [PMID:16832061] - Cutcliffe JW,Hellmann E,Heyl A,Rashotte AM
CRFs form protein-protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain. J. Exp. Bot., 2011. 62(14): p. 4995-5002 [PMID:21705390] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zwack PJ,Compton MA,Adams CI,Rashotte AM
Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]
|