PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G57480.1 | ||||||||
Common Name | SAP13, T8H10.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27760.4 Da PI: 8.2729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.8 | 2.1e-06 | 221 | 243 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L +Hi + H AT3G57480.1 221 VCPKCSRGFRDPVDLLKHIDKdH 243 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 1.96E-12 | 6 | 49 | No hit | No description |
PROSITE profile | PS51039 | 7.647 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.8E-10 | 11 | 50 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.5E-13 | 13 | 49 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 2.7E-5 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 9.6E-9 | 91 | 147 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 6.28E-9 | 93 | 145 | No hit | No description |
PROSITE profile | PS51039 | 8.051 | 98 | 151 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 5.8E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0047 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 8.891 | 220 | 248 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 222 | 243 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLQVYCLDHR SYMKHDCPKG NRGDVTVVIC 60 PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD 120 CSIDHCLKHR FGPDHSCSGP KKPESSFSFM GFLSTNTKEA PASSSSSSRW SSLFASAEAS 180 ISRLGNDISQ KLQFASGNDG NSEKTQERNG KQNCGKVTVD VCPKCSRGFR DPVDLLKHID 240 KDHRGTSKA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.43073 | 0.0 | leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145339612 | 0.0 | ||||
Genevisible | 251634_at | 0.0 | ||||
Expression Atlas | AT3G57480 | - | ||||
AtGenExpress | AT3G57480 | - | ||||
ATTED-II | AT3G57480 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G57480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G57480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119096 | 0.0 | AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05. | |||
GenBank | BT006223 | 0.0 | BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319783.1 | 0.0 | zinc finger (C2H2 type, AN1-like) family protein | ||||
Refseq | NP_191307.1 | 0.0 | zinc finger (C2H2 type, AN1-like) family protein | ||||
Swissprot | Q9SCM4 | 0.0 | SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
TrEMBL | A0A178VKM1 | 1e-166 | A0A178VKM1_ARATH; Uncharacterized protein | ||||
TrEMBL | D7LVT6 | 1e-168 | D7LVT6_ARALL; Uncharacterized protein | ||||
STRING | AT3G57480.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 | Representative plant | OGRP1909 | 15 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT3G57480.1 |
Entrez Gene | 824915 |
iHOP | AT3G57480 |
wikigenes | AT3G57480 |