PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G53310.1 | ||||||||
Common Name | F4P12.10, REM20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32618.3 Da PI: 4.2699 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 9.9e-20 | 11 | 101 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv+ ++s l++p +f++ + +kt++l+ + g+ W+v l +k sg+ +lt+GW +F+++++Lk g+f++F +dg+++f v+vf+ AT3G53310.1 11 FFKVF--LVESASESLMIPLPFMAFLADP--LPKTVKLQGLGGKLWTVSL--KKISGAAYLTRGWPKFAEEHELKNGEFMTFVYDGHRTF--EVSVFD 100 77888..444555569*******777655..899****************..********************************998777..999998 PP S CS B3 99 k 99 + AT3G53310.1 101 R 101 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-21 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-22 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.60E-18 | 9 | 100 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-20 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-17 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-5 | 187 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-9 | 187 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.43 | 191 | 285 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MADDSELYPR FFKVFLVESA SESLMIPLPF MAFLADPLPK TVKLQGLGGK LWTVSLKKIS 60 GAAYLTRGWP KFAEEHELKN GEFMTFVYDG HRTFEVSVFD RWGSKEVRAE IQAIPLSDSD 120 SDSVVEDEKD STDVVEDDDD EDEDEDEDDD GSFDEDEEIS QSLYPIDEET ATDAAVFEGN 180 LDVEALTNPH FPTTLKNRIY ELLIPANVVK DNNLEFGSSI KYIDGEGTLV GLRGKWADKR 240 VCFKGWDRIC RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-17 | 1 | 99 | 3 | 99 | At1g16640 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.47486 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145339447 | 0.0 | ||||
Genevisible | 251986_at | 0.0 | ||||
Expression Atlas | AT3G53310 | - | ||||
AtGenExpress | AT3G53310 | - | ||||
ATTED-II | AT3G53310 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G53310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G53310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087586 | 0.0 | AY087586.1 Arabidopsis thaliana clone 36830 mRNA, complete sequence. | |||
GenBank | BT025724 | 0.0 | BT025724.1 Arabidopsis thaliana At3g53310 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566984.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q8LAV5 | 0.0 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | A0A178VMK3 | 0.0 | A0A178VMK3_ARATH; Uncharacterized protein | ||||
STRING | AT3G53310.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Link Out ? help Back to Top | |
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Phytozome | AT3G53310.1 |
Entrez Gene | 824499 |
iHOP | AT3G53310 |
wikigenes | AT3G53310 |
Publications ? help Back to Top | |||
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