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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT3G45150.1 |
Common Name | T14D3.90, TCP16 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
TCP |
Protein Properties |
Length: 165aa MW: 17997.8 Da PI: 9.6318 |
Description |
TCP domain protein 16 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 92 | 1.2e-28 | 12 | 141 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.......... 88
+++++ +++h k ggRdRR+R++ ++a ++F L++eLGf++d++t+ WLlq+a+pai ++tg +++s+++ +++++ s +++ +
AT3G45150.1 12 KARRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGHgvTTTSNEDIQPNRNFPSYTFNGDNisnnvfpctv 109
567889*********************************************************66444443444444444444333335566777777 PP
TCP 89 .....kaaksaakskksqksaasalnlakesr 115
+++ + ++ +++++++ + ++++ +
AT3G45150.1 110 vntghRQMVFPVSTMTDHAPSTNYSTISDNYN 141
77777555555555555555555555555333 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007275 | Biological Process | multicellular organism development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MDSKNGINNS QKARRTPKDR HLKIGGRDRR IRIPPSVAPQ LFRLTKELGF KTDGETVSWL 60 LQNAEPAIFA ATGHGVTTTS NEDIQPNRNF PSYTFNGDNI SNNVFPCTVV NTGHRQMVFP 120 VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing microspores during pollen development. First observed at the tetrad stage, and later accumulates in an early unicellular stage. Levels decrease as the pollen grain matures. {ECO:0000269|PubMed:16786299}. |
Uniprot | TISSUE SPECIFICITY: Mostly in anther in young buds. {ECO:0000269|PubMed:16786299}. |
Functional Description ? help
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Source |
Description |
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Function -- GeneRIF ? help
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- TCP16, a putative transcription factor, plays a crucial role in early processes in pollen development. [TCP16]
[PMID: 16786299] - TCP16 is able to modulate the induction of meristematic programs and the differentiation state of plant cells.
[PMID: 27404135]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL138649 | 0.0 | AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Takeda T, et al.
RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development. Plant Mol. Biol., 2006. 61(1-2): p. 165-77 [PMID:16786299] - Aguilar-Martínez JA,Poza-Carrión C,Cubas P
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell, 2007. 19(2): p. 458-72 [PMID:17307924] - Klopffleisch K, et al.
Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Mol. Syst. Biol., 2011. 7: p. 532 [PMID:21952135] - Causier B,Ashworth M,Guo W,Davies B
The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol., 2012. 158(1): p. 423-38 [PMID:22065421] - Viola IL,Reinheimer R,Ripoll R,Manassero NG,Gonzalez DH
Determinants of the DNA binding specificity of class I and class II TCP transcription factors. J. Biol. Chem., 2012. 287(1): p. 347-56 [PMID:22074922] - Yang X, et al.
Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy. Plant Cell, 2012. 24(5): p. 1834-47 [PMID:22649271] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] - Mar
Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Plant Physiol., 2014. 166(2): p. 1022-32 [PMID:25118255] - Uberti-Manassero NG,Coscueta ER,Gonzalez DH
Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]
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