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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT3G13840.1 |
Common Name | MCP4.6, SCL29 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 510aa MW: 57181.4 Da PI: 5.1144 |
Description |
GRAS family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 283 | 8.9e-87 | 146 | 510 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl...fsevsPilkfsh 95
++lL cA a+++++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++ s++++++ p+ + ++ +++ + + f+evsP++ + +
AT3G13840.1 146 EKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSS--SSVSSSFwPVFTFASAEVKMFQK---TllkFYEVSPWFALPN 238
6899*************************************************9..77887775777777444444444...4446************ PP
GRAS 96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvak 184
+aN+aIl+ ++++ + +HiiD+++s+G+QWp+Ll+aL++R ++pp++RiT++++ +++ ++g++L fA++l+++++++vl
AT3G13840.1 239 NMANSAILQILAQDpkdkKDLHIIDIGVSHGMQWPTLLEALSCRLeGPPPRVRITVISDLTADipfsVGPPGYNYGSQLLGFARSLKINLQISVL--- 333
***********9988877889***********************956667*********99999998888999********************96... PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpresee 281
+l+ ++++p+E+l+V+ +++lh+l +s+++er e+Lk+v+sl+Pk vv++e++ ++ +s++F+++f+++ley+++++ds+++++ +e
AT3G13840.1 334 ----DKLQLIDTSPHENLIVCAQFRLHHLK---HSINDERGETLKAVRSLRPKGVVLCENNGECsSSADFAAGFSKKLEYVWKFLDSTSSGF----KE 420
....456889*******************8...9999999************************9999********************9997....88 PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+++ Er+l++ e+++v++++g++ +e +ekW er++eaGF +++e+a++ ak+llrk++ +++ r+e+ + + l+Wk++++ ++S W+
AT3G13840.1 421 ENSEERKLMEGEATKVLMNAGDM----NEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDnNWEIRMEDGDTFAGLMWKGEAVSFCSLWK 510
88889999999***********9....9************************************666666666666666**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042446 | Biological Process | hormone biosynthetic process |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI 60 QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN DQSRKRSHDG FLEAQQVKKS 120 ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD 180 ANRRLAAFGL RALQHHLSSS SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM 240 ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA 300 DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH 360 SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF SKKLEYVWKF LDSTSSGFKE 420 ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD 480 NNWEIRMEDG DTFAGLMWKG EAVSFCSLWK
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB028610 | 0.0 | AB028610.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCP4. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Bolle C
The role of GRAS proteins in plant signal transduction and development. Planta, 2004. 218(5): p. 683-92 [PMID:14760535] - Tian C,Wan P,Sun S,Li J,Chen M
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol., 2004. 54(4): p. 519-32 [PMID:15316287] - Gao MJ,Parkin I,Lydiate D,Hannoufa A
An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol. Biol., 2004. 55(3): p. 417-31 [PMID:15604690] - Lee MH, et al.
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol., 2008. 67(6): p. 659-70 [PMID:18500650]
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