PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G06220.1
Common NameF28L1.16
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 174aa    MW: 19411.4 Da    PI: 4.0375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G06220.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-191697996
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +  +s+ l +p+++ e+   + + +kt +l+ + gr+W+v +    k+++++l++GW++Fv +n+Lk+g+f++F +dg ++    v++
  AT3G06220.1 16 SCVSSNSLLIPRSYYEHL--PRRLPKTAILTGTGGRVWKVAM--MSKREQVYLARGWENFVADNELKDGEFLTFVFDGYKSY--EVSI 97
                 5567778********554..456899****************..99999**************************9886555..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-198100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-218103IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-20898No hitNo description
PROSITE profilePS5086314.6928101IPR003340B3 DNA binding domain
SMARTSM010199.4E-1810101IPR003340B3 DNA binding domain
PfamPF023623.9E-161590IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASGDVLPRF YTVFLSCVSS NSLLIPRSYY EHLPRRLPKT AILTGTGGRV WKVAMMSKRE  60
QVYLARGWEN FVADNELKDG EFLTFVFDGY KSYEVSIYGR GSCKETRAVV HVEEISDESE  120
SDNDSLGSLV DVTPMPAEEN SDDTEGDNDS CDSVVDVTPM PVEEISDASD SDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-20910310104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.532010.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256389_at0.0
Expression AtlasAT3G06220-
AtGenExpressAT3G06220-
ATTED-IIAT3G06220-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G06220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G06220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4466400.0DQ446640.1 Arabidopsis thaliana clone pENTR221-At3g06220 transcriptional factor B3 family protein (At3g06220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187273.21e-126AP2/B3-like transcriptional factor family protein
SwissprotQ1PES71e-127Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLA0A178VJ381e-124A0A178VJ38_ARATH; Uncharacterized protein
STRINGAT3G06220.11e-125(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Publications ? help Back to Top
  1. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]