PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G06220.1 | ||||||||
Common Name | F28L1.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 174aa MW: 19411.4 Da PI: 4.0375 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.1 | 1.8e-19 | 16 | 97 | 9 | 96 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +s+ l +p+++ e+ + + +kt +l+ + gr+W+v + k+++++l++GW++Fv +n+Lk+g+f++F +dg ++ v++ AT3G06220.1 16 SCVSSNSLLIPRSYYEHL--PRRLPKTAILTGTGGRVWKVAM--MSKREQVYLARGWENFVADNELKDGEFLTFVFDGYKSY--EVSI 97 5567778********554..456899****************..99999**************************9886555..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 8 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.74E-20 | 8 | 98 | No hit | No description |
PROSITE profile | PS50863 | 14.692 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-18 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-16 | 15 | 90 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASGDVLPRF YTVFLSCVSS NSLLIPRSYY EHLPRRLPKT AILTGTGGRV WKVAMMSKRE 60 QVYLARGWEN FVADNELKDG EFLTFVFDGY KSYEVSIYGR GSCKETRAVV HVEEISDESE 120 SDNDSLGSLV DVTPMPAEEN SDDTEGDNDS CDSVVDVTPM PVEEISDASD SDYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-20 | 9 | 103 | 10 | 104 | At1g16640 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.53201 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 256389_at | 0.0 | ||||
Expression Atlas | AT3G06220 | - | ||||
AtGenExpress | AT3G06220 | - | ||||
ATTED-II | AT3G06220 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G06220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G06220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446640 | 0.0 | DQ446640.1 Arabidopsis thaliana clone pENTR221-At3g06220 transcriptional factor B3 family protein (At3g06220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187273.2 | 1e-126 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q1PES7 | 1e-127 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
TrEMBL | A0A178VJ38 | 1e-124 | A0A178VJ38_ARATH; Uncharacterized protein | ||||
STRING | AT3G06220.1 | 1e-125 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Link Out ? help Back to Top | |
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Phytozome | AT3G06220.1 |
Entrez Gene | 819796 |
iHOP | AT3G06220 |
wikigenes | AT3G06220 |
Publications ? help Back to Top | |||
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