PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G45160.1 | ||||||||
Common Name | ATHAM1, HAM1, LOM1, SCL27, T14P1.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 640aa MW: 70205.7 Da PI: 5.4346 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.1 | 4e-94 | 269 | 639 | 2 | 374 |
GRAS 2 velLlecAeavss.gdle.....laqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +e+L+++Ae + + g+++ laq +Larl+++ +s++++p+qR+a++++eAL + +++ ++ pp +++n + ++aa++ fse+sP+ AT2G45160.1 269 IEQLFNAAELIGTtGNNNgdhtvLAQGILARLNHHlntSSNHKSPFQRAASHIAEALLSLIHN------ESSPPLI-TPENLILRIAAYRSFSETSPF 359 678899999886642222344469**********998788888*******************9......4444444.4578***************** PP GRAS 91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 l+f ++taNq Ile+ +++ +r+HiiDfd+++G+QW +L+q+Las R++ + sl++T++++p s+ ++ el+ t+e+L+ fA e+++pfe++ AT2G45160.1 360 LQFVNFTANQSILESCNESgfDRIHIIDFDVGYGGQWSSLMQELASgvggrRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTFAGEVKIPFEIE 457 ****************99988************************744443557799*********9988899************************* PP GRAS 180 vlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +l ++ l + ++ L++++ +Ea+aVnl ++ + + +L+++k+lsP++vv++++ +d+n+++F + ++++l+y+++l++sl+a+ AT2G45160.1 458 LLSVELLLNPAYWPLSLRSseKEAIAVNLPVNSVASG--------YLPLILRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDAN- 546 **9999999999999888777*********9666654........5677************************************************. PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++++++++Er++++++i++++++++++ e+ Wr ++++GF+p++ls+ a++qa++ll++ +++g++ve+++ slv++W++++Lv+vSaW AT2G45160.1 547 --QNQDDSSIERFWVQPSIEKLLMKRHRW----IERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAW 638 ..89*************************....89999************************************************************ PP GRAS 374 r 374 + AT2G45160.1 639 K 639 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.333 | 243 | 619 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-91 | 269 | 639 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000017 | anatomy | vascular leaf primordium | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL 60 RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN NKCSQMGLDD LDGVLSASSP 120 GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI 180 NPSNHCLFYN PPLSPPAKRF NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ 240 FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL 300 NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL 360 QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM QELASGVGGR RRNRASSLKL 420 TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE 480 AIAVNLPVNS VASGYLPLIL RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL 540 ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA 600 QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-28 | 298 | 639 | 24 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27046 | 0.0 | bud| flower| leaf| seed| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30689940 | 0.0 | ||||
Genevisible | 266131_at | 0.0 | ||||
Expression Atlas | AT2G45160 | - | ||||
AtGenExpress | AT2G45160 | - | ||||
ATTED-II | AT2G45160 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G45160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT3G11260, AT1G46480 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G45160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053760 | 0.0 | BT053760.1 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_182041.1 | 0.0 | GRAS family transcription factor | ||||
Swissprot | Q7XJM8 | 0.0 | SCL27_ARATH; Scarecrow-like protein 27 | ||||
TrEMBL | A0A384KUR0 | 0.0 | A0A384KUR0_ARATH; LOM1 | ||||
TrEMBL | B7ZWR8 | 0.0 | B7ZWR8_ARATH; At2g45160 | ||||
STRING | AT2G45160.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13417 | 18 | 28 |
Representative plant | OGRP1750 | 12 | 42 |
Link Out ? help Back to Top | |
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Phytozome | AT2G45160.1 |
Entrez Gene | 819124 |
iHOP | AT2G45160 |
wikigenes | AT2G45160 |