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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT2G29060.1 |
Common Name | SCL33, T9I4.14 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 694aa MW: 78101.3 Da PI: 5.8885 |
Description |
GRAS family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 363.9 | 2.2e-111 | 318 | 691 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++ L++cA+avs +d + a++lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts +s+ l+a++++ v+P+ k++ + a
AT2G29060.1 318 LRTMLVSCAQAVSINDRRTADELLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---TSDMLKAYQTYISVCPFKKIAIIFA 412
5789**************************************************************9999...89*********************** PP
GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
N+ I++ ++++ +++HiiDf+is G+QWp+L++ La R++++ +lRiTg++ p+ g +e + etg+rLak+++++++pfe+n+ +a+++e+++le
AT2G29060.1 413 NHSIMRLASSAnaKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGRRLAKYCQKFNIPFEYNA-IAQKWESIKLE 509
****99988776799****************************************99*****************************.7********** PP
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
+L++k+gE +aVn+ ++ +llde+v+++s+rd+vLkl+++++P+v++ ++n++ F++rf e l +ys+lfd+ +++l re+ r++ E+e+
AT2G29060.1 510 DLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFY 607
************************************************************************************************** PP
GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kl+++ + +++ v+++ ++l++gWk+r ++ S W
AT2G29060.1 608 GREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYkPKEFDVDQDCHWLLQGWKGRIVYGSSIW 691
***************************************************99887899************************* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 694 aa
Download sequence Send
to blast |
MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV 60 LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YPVDDSDQPL TTTTSLAQLV 120 SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG 180 SSFSGDLVSN MFNDTDLALQ FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH 240 LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK 300 GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH 360 YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS VCPFKKIAII FANHSIMRLA 420 SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG 480 RRLAKYCQKF NIPFEYNAIA QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP 540 RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV 600 MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES 660 GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC005315 | 0.0 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. |
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Bolle C
The role of GRAS proteins in plant signal transduction and development. Planta, 2004. 218(5): p. 683-92 [PMID:14760535] - Tian C,Wan P,Sun S,Li J,Chen M
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol., 2004. 54(4): p. 519-32 [PMID:15316287] - Gao MJ,Parkin I,Lydiate D,Hannoufa A
An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol. Biol., 2004. 55(3): p. 417-31 [PMID:15604690] - Lorkovic ZJ,Lehner R,Forstner C,Barta A
Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA, 2005. 11(7): p. 1095-107 [PMID:15987817] - Lee MH, et al.
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol., 2008. 67(6): p. 659-70 [PMID:18500650]
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