- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] - Yamashino T, et al.
A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol., 2003. 44(6): p. 619-29 [PMID:12826627] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] - Huq E, et al.
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science, 2004. 305(5692): p. 1937-41 [PMID:15448264] - Oh E, et al.
PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell, 2004. 16(11): p. 3045-58 [PMID:15486102] - Penfield S, et al.
Cold and light control seed germination through the bHLH transcription factor SPATULA. Curr. Biol., 2005. 15(22): p. 1998-2006 [PMID:16303558] - Shen H,Moon J,Huq E
PIF1 is regulated by light-mediated degradation through the ubiquitin-26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis. Plant J., 2005. 44(6): p. 1023-35 [PMID:16359394] - Oh E, et al.
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J., 2006. 47(1): p. 124-39 [PMID:16740147] - Dreher K,Callis J
Ubiquitin, hormones and biotic stress in plants. Ann. Bot., 2007. 99(5): p. 787-822 [PMID:17220175] - Oh E, et al.
PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell, 2007. 19(4): p. 1192-208 [PMID:17449805] - Zentella R, et al.
Global analysis of della direct targets in early gibberellin signaling in Arabidopsis. Plant Cell, 2007. 19(10): p. 3037-57 [PMID:17933900] - Alabadí D, et al.
Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J., 2008. 53(2): p. 324-35 [PMID:18053005] - Kim DH, et al.
SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. Plant Cell, 2008. 20(5): p. 1260-77 [PMID:18487351] - Shen H, et al.
Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes. Plant Cell, 2008. 20(6): p. 1586-602 [PMID:18539749] - Moon J,Zhu L,Shen H,Huq E
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(27): p. 9433-8 [PMID:18591656] - Sawada Y, et al.
Germination of photoblastic lettuce seeds is regulated via the control of endogenous physiologically active gibberellin content, rather than of gibberellin responsiveness. J. Exp. Bot., 2008. 59(12): p. 3383-93 [PMID:18653696] - Leivar P, et al.
Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness. Curr. Biol., 2008. 18(23): p. 1815-23 [PMID:19062289] - Oh E, et al.
Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell, 2009. 21(2): p. 403-19 [PMID:19244139] - Castillon A,Shen H,Huq E
Blue light induces degradation of the negative regulator phytochrome interacting factor 1 to promote photomorphogenic development of Arabidopsis seedlings. Genetics, 2009. 182(1): p. 161-71 [PMID:19255368] - Skinner DJ,Gasser CS
Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. BMC Plant Biol., 2009. 9: p. 29 [PMID:19291320] - Shin J, et al.
Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(18): p. 7660-5 [PMID:19380720] - Stephenson PG,Fankhauser C,Terry MJ
PIF3 is a repressor of chloroplast development. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(18): p. 7654-9 [PMID:19380736] - Lorrain S,Trevisan M,Pradervand S,Fankhauser C
Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light. Plant J., 2009. 60(3): p. 449-61 [PMID:19619162] - Gabriele S, et al.
The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1. Plant J., 2010. 61(2): p. 312-23 [PMID:19874540] - Penfield S,Josse EM,Halliday KJ
A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy. Plant Mol. Biol., 2010. 73(1-2): p. 89-95 [PMID:19911288] - Leivar P, et al.
Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings. Plant Cell, 2009. 21(11): p. 3535-53 [PMID:19920208] - Zhong S, et al.
EIN3/EIL1 cooperate with PIF1 to prevent photo-oxidation and to promote greening of Arabidopsis seedlings. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(50): p. 21431-6 [PMID:19948955] - Gallego-Bartolomé J, et al.
Transcriptional diversification and functional conservation between DELLA proteins in Arabidopsis. Mol. Biol. Evol., 2010. 27(6): p. 1247-56 [PMID:20093430] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Toledo-Ortiz G,Huq E,Rodr
Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(25): p. 11626-31 [PMID:20534526] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] - Richter R,Behringer C,M
The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS. Genes Dev., 2010. 24(18): p. 2093-104 [PMID:20844019] - Kang H,Oh E,Choi G,Lee D
Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor. Int J Data Min Bioinform, 2010. 4(5): p. 588-99 [PMID:21133043] - Kim K, et al.
Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors. Proc. Natl. Acad. Sci. U.S.A., 2011. 108(4): p. 1729-34 [PMID:21220341] - Rizza A,Boccaccini A,Lopez-Vidriero I,Costantino P,Vittorioso P
Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination. New Phytol., 2011. 190(4): p. 896-905 [PMID:21299564] - Bu Q, et al.
Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis. J. Biol. Chem., 2011. 286(14): p. 12066-74 [PMID:21330376] - Park J,Lee N,Kim W,Lim S,Choi G
ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds. Plant Cell, 2011. 23(4): p. 1404-15 [PMID:21467583] - Lozano-Juste J,Le
Nitric oxide regulates DELLA content and PIF expression to promote photomorphogenesis in Arabidopsis. Plant Physiol., 2011. 156(3): p. 1410-23 [PMID:21562334] - Liu Z, et al.
Phytochrome interacting factors (PIFs) are essential regulators for sucrose-induced hypocotyl elongation in Arabidopsis. J. Plant Physiol., 2011. 168(15): p. 1771-9 [PMID:21684034] - Rausenberger J, et al.
Photoconversion and nuclear trafficking cycles determine phytochrome A's response profile to far-red light. Cell, 2011. 146(5): p. 813-25 [PMID:21884939] - Bu Q,Castillon A,Chen F,Zhu L,Huq E
Dimerization and blue light regulation of PIF1 interacting bHLH proteins in Arabidopsis. Plant Mol. Biol., 2011. 77(4-5): p. 501-11 [PMID:21928113] - Pfeiffer A, et al.
Interaction with plant transcription factors can mediate nuclear import of phytochrome B. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(15): p. 5892-7 [PMID:22451940] - Leivar P,Monte E,Cohn MM,Quail PH
Phytochrome signaling in green Arabidopsis seedlings: impact assessment of a mutually negative phyB-PIF feedback loop. Mol Plant, 2012. 5(3): p. 734-49 [PMID:22492120] - Leivar P, et al.
Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis. Plant Cell, 2012. 24(4): p. 1398-419 [PMID:22517317] - Tang W, et al.
Transposase-derived proteins FHY3/FAR1 interact with PHYTOCHROME-INTERACTING FACTOR1 to regulate chlorophyll biosynthesis by modulating HEMB1 during deetiolation in Arabidopsis. Plant Cell, 2012. 24(5): p. 1984-2000 [PMID:22634759] - Oh E,Zhu JY,Wang ZY
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses. Nat. Cell Biol., 2012. 14(8): p. 802-9 [PMID:22820378] - Park E, et al.
Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters. Plant J., 2012. 72(4): p. 537-46 [PMID:22849408] - Lee KP, et al.
Spatially and genetically distinct control of seed germination by phytochromes A and B. Genes Dev., 2012. 26(17): p. 1984-96 [PMID:22948663] - Sairanen I, et al.
Soluble carbohydrates regulate auxin biosynthesis via PIF proteins in Arabidopsis. Plant Cell, 2012. 24(12): p. 4907-16 [PMID:23209113] - Ibarra SE,Auge G,S
Transcriptional programs related to phytochrome A function in Arabidopsis seed germination. Mol Plant, 2013. 6(4): p. 1261-73 [PMID:23292879] - Zhang Y, et al.
A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis. PLoS Genet., 2013. 9(1): p. e1003244 [PMID:23382695] - Footitt S,Huang Z,Clay HA,Mead A,Finch-Savage WE
Temperature, light and nitrate sensing coordinate Arabidopsis seed dormancy cycling, resulting in winter and summer annual phenotypes. Plant J., 2013. 74(6): p. 1003-15 [PMID:23590427] - Chen D, et al.
Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis. Plant Cell, 2013. 25(5): p. 1657-73 [PMID:23645630] - Shi H, et al.
HFR1 sequesters PIF1 to govern the transcriptional network underlying light-initiated seed germination in Arabidopsis. Plant Cell, 2013. 25(10): p. 3770-84 [PMID:24179122] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Soy J,Leivar P,Monte E
PIF1 promotes phytochrome-regulated growth under photoperiodic conditions in Arabidopsis together with PIF3, PIF4, and PIF5. J. Exp. Bot., 2014. 65(11): p. 2925-36 [PMID:24420574] - Li Y,Jing Y,Li J,Xu G,Lin R
Arabidopsis VQ MOTIF-CONTAINING PROTEIN29 represses seedling deetiolation by interacting with PHYTOCHROME-INTERACTING FACTOR1. Plant Physiol., 2014. 164(4): p. 2068-80 [PMID:24569844] - Lee N,Kang H,Lee D,Choi G
A histone methyltransferase inhibits seed germination by increasing PIF1 Plant J., 2014. 78(2): p. 282-93 [PMID:24635727] - Xu X, et al.
PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis. Plant Cell, 2014. 26(5): p. 1992-2006 [PMID:24858936] - Luo Q, et al.
COP1 and phyB Physically Interact with PIL1 to Regulate Its Stability and Photomorphogenic Development in Arabidopsis. Plant Cell, 2014. 26(6): p. 2441-2456 [PMID:24951480] - Krzymuski M, et al.
Phytochrome A antagonizes PHYTOCHROME INTERACTING FACTOR 1 to prevent over-activation of photomorphogenesis. Mol Plant, 2014. 7(9): p. 1415-1428 [PMID:25009301] - Dong J, et al.
Arabidopsis DE-ETIOLATED1 represses photomorphogenesis by positively regulating phytochrome-interacting factors in the dark. Plant Cell, 2014. 26(9): p. 3630-45 [PMID:25248553] - Adams E,Diaz C,Hong JP,Shin R
14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs. Int J Mol Sci, 2014. 15(12): p. 22801-14 [PMID:25501334] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. Mol. Biol. Evol., 2015. 32(7): p. 1767-73 [PMID:25750178] - Shi H, et al.
Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(12): p. 3817-22 [PMID:25775589] - Capella M,Ribone PA,Arce AL,Chan RL
Arabidopsis thaliana HomeoBox 1 (AtHB1), a Homedomain-Leucine Zipper I (HD-Zip I) transcription factor, is regulated by PHYTOCHROME-INTERACTING FACTOR 1 to promote hypocotyl elongation. New Phytol., 2015. 207(3): p. 669-82 [PMID:25865500] - Qiu Y, et al.
HEMERA Couples the Proteolysis and Transcriptional Activity of PHYTOCHROME INTERACTING FACTORs in Arabidopsis Photomorphogenesis. Plant Cell, 2015. 27(5): p. 1409-27 [PMID:25944101] - Zhu L, et al.
CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1. Nat Commun, 2015. 6: p. 7245 [PMID:26037329] - Bou-Torrent J, et al.
Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors. Plant Physiol., 2015. 169(3): p. 1584-94 [PMID:26082398] - Lee N,Park J,Kim K,Choi G
The Transcriptional Coregulator LEUNIG_HOMOLOG Inhibits Light-Dependent Seed Germination in Arabidopsis. Plant Cell, 2015. 27(8): p. 2301-13 [PMID:26276832] - Galvão VC,Collani S,Horrer D,Schmid M
Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Plant J., 2015. 84(5): p. 949-62 [PMID:26466761] - Zhu L, et al.
A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231] - Pacín M,Semmoloni M,Legris M,Finlayson SA,Casal JJ
Convergence of CONSTITUTIVE PHOTOMORPHOGENESIS 1 and PHYTOCHROME INTERACTING FACTOR signalling during shade avoidance. New Phytol., 2016. 211(3): p. 967-79 [PMID:27105120] - Kim J, et al.
PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1. Plant Cell, 2016. 28(6): p. 1388-405 [PMID:27303023] - Martin G,Soy J,Monte E
Genomic Analysis Reveals Contrasting PIFq Contribution to Diurnal Rhythmic Gene Expression in PIF-Induced and -Repressed Genes. Front Plant Sci, 2016. 7: p. 962 [PMID:27458465] - Zhu L,Xin R,Huq E
A Protein-Based Genetic Screening Uncovers Mutants Involved in Phytochrome Signaling in Arabidopsis. Front Plant Sci, 2016. 7: p. 1086 [PMID:27499759] - Gangl R,Tenhaken R
Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. Front Plant Sci, 2016. 7: p. 1115 [PMID:27507985] - Kim K, et al.
PIF1 Regulates Plastid Development by Repressing Photosynthetic Genes in the Endodermis. Mol Plant, 2016. 9(10): p. 1415-1427 [PMID:27591813] - Kim J, et al.
Epidermal Phytochrome B Inhibits Hypocotyl Negative Gravitropism Non-Cell-Autonomously. Plant Cell, 2016. 28(11): p. 2770-2785 [PMID:27758895] - Zhang D,Li Y,Zhang X,Zha P,Lin R
The SWI2/SNF2 Chromatin-Remodeling ATPase BRAHMA Regulates Chlorophyll Biosynthesis in Arabidopsis. Mol Plant, 2017. 10(1): p. 155-167 [PMID:27865928] - Xu X, et al.
Reciprocal proteasome-mediated degradation of PIFs and HFR1 underlies photomorphogenic development in Arabidopsis. Development, 2017. 144(10): p. 1831-1840 [PMID:28420710] - Shor E,Paik I,Kangisser S,Green R,Huq E
PHYTOCHROME INTERACTING FACTORS mediate metabolic control of the circadian system in Arabidopsis. New Phytol., 2017. 215(1): p. 217-228 [PMID:28440582] - Gu D, et al.
Identification of HDA15-PIF1 as a key repression module directing the transcriptional network of seed germination in the dark. Nucleic Acids Res., 2017. 45(12): p. 7137-7150 [PMID:28444370] - Zhang X, et al.
A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis. Plant Physiol., 2017. 174(4): p. 2487-2500 [PMID:28687557] - Paik I,Kathare PK,Kim JI,Huq E
Expanding Roles of PIFs in Signal Integration from Multiple Processes. Mol Plant, 2017. 10(8): p. 1035-1046 [PMID:28711729] - Li R, et al.
Nitric oxide promotes light-initiated seed germination by repressing PIF1 expression and stabilizing HFR1. Plant Physiol. Biochem., 2018. 123: p. 204-212 [PMID:29248678] - Wu M, et al.
PIL5 represses floral transition in Arabidopsis under long day conditions. Biochem. Biophys. Res. Commun., 2018. 499(3): p. 513-518 [PMID:29588173] - Majee M, et al.
KELCH F-BOX protein positively influences Arabidopsis seed germination by targeting PHYTOCHROME-INTERACTING FACTOR1. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(17): p. E4120-E4129 [PMID:29632208]
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