PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G04038.1 | ||||||||
Common Name | AtbZIP48, bZIP48 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 19501.6 Da PI: 6.7799 | ||||||||
Description | basic leucine-zipper 48 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.8 | 9.9e-13 | 74 | 124 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+ +NRe+ArrsR RK+ ++eL v L +eN L+++l++ +++ AT2G04038.1 74 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSET 124 79********************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-14 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 72 | 123 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.5E-10 | 74 | 123 | No hit | No description |
Pfam | PF00170 | 1.5E-10 | 74 | 124 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.14E-12 | 74 | 123 | No hit | No description |
CDD | cd14702 | 3.42E-17 | 75 | 123 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MIPAEINGYF QYLSPEYNVI NMPSSPTSSL NYLNDLIINN NNYSSSSNSQ DLMISNNSTS 60 DEDHHQSIMV LDERKQRRML SNRESARRSR MRKQRHLDEL WSQVIRLRNE NNCLIDKLNR 120 VSETQNCVLK ENSKLKEEAS DLRQLVCELK SNKNNNNSFP REFEDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 93 | RRSRMRKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263407_at | 0.0 | ||||
Expression Atlas | AT2G04038 | - | ||||
AtGenExpress | AT2G04038 | - | ||||
ATTED-II | AT2G04038 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00262 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G04038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G13600 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G04038 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007178 | 0.0 | AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178489.1 | 1e-116 | basic leucine-zipper 48 | ||||
TrEMBL | A0A178VS52 | 1e-115 | A0A178VS52_ARATH; BZIP48 | ||||
TrEMBL | Q8RU59 | 1e-115 | Q8RU59_ARATH; BZIP protein (AtbZIP48) | ||||
STRING | AT2G04038.1 | 1e-115 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2892 | 24 | 69 | Representative plant | OGRP3104 | 11 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT2G04038.1 |
Entrez Gene | 814936 |
iHOP | AT2G04038 |
wikigenes | AT2G04038 |