PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G02450.2 | ||||||||
Common Name | ANAC034, ANAC035, AtLOV1, LOV1, NAC035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 414aa MW: 47303.1 Da PI: 6.6458 | ||||||||
Description | NAC domain containing protein 35 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.6e-51 | 52 | 177 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ AT2G02450.2 52 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRP 148 79***************************.89***************888889********************************************* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg++t+W+m+eyrl AT2G02450.2 149 IGLKKTLVFYSGKAPKGTRTSWIMNEYRL 177 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-56 | 51 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.272 | 51 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-25 | 53 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MAIVSSTTSI IPMSNQVNNN EKGIEDNDHR GGQESHVQNE DEADDHDHDM VMPGFRFHPT 60 EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWYFY VPRDRKYRNG 120 DRPNRVTTSG YWKATGADRM IRSETSRPIG LKKTLVFYSG KAPKGTRTSW IMNEYRLPHH 180 ETEKYQKAEI SLCRVYKRPG VEDHPSVPRS LSTRHHNHNS STSSRLALRQ QQHHSSSSNH 240 SDNNLNNNNN INNLEKLSTE YSGDGSTTTT TTNSNSDVTI ALANQNIYRP MPYDTSNNTL 300 IVSTRNHQDD DETAIVDDLQ RLVNYQISDG GNINHQYFQI AQQFHHTQQQ NANANALQLV 360 AAATTATTLM PQTQAALAMN MIPAGTIPNN ALWDMWNPIV PDGNRDHYTN IPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-57 | 42 | 198 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-57 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 266175_at | 0.0 | ||||
Expression Atlas | AT2G02450 | - | ||||
AtGenExpress | AT2G02450 | - | ||||
ATTED-II | AT2G02450 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G02450.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT5G15840(R) |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Early flowering phenotype under long-day conditions. Hypersensitivity to cold. {ECO:0000269|PubMed:17653269}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G02450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565284.3 | 0.0 | NAC domain containing protein 35 | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A178W0N4 | 0.0 | A0A178W0N4_ARATH; NAC035 | ||||
STRING | AT2G02450.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT2G02450.2 |
Entrez Gene | 814775 |
iHOP | AT2G02450 |
wikigenes | AT2G02450 |